Gene detail

Detail information of GWHGAAEX010238/evm.TU.scaffold_28.40

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743766406\|ref\|XP_010913443.1\|	2.08E-180	PREDICTED: uncharacterized protein LOC105039128 [Elaeis guineensis]
trEMBL	tr\|M0TIN6\|M0TIN6_MUSAM	6.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P18490_001}
TAIR	AT1G53200	1.00E-45	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	2482162	2501804	+

Transcript Sequence
>GWHTAAEX010238 GATTTGTTTTTCCTGCTTCCCCGGCGTCGTCTCTTCCAGTGGGCTTTATATTATTAGGGTTTGAGAGCGATTTAGATTTCTTTTTCTAGGATTTGTTTACGTTAACCAATCCGCAGTTAGGATTTACCCAACTAAAAAATCCTGCTACCAAGCAGCCCAAGCAGCCCAAGCAGCCCATTCAATTTTCCGGTGCCACATATTGCACTGCTCTTACAAATGCCCCCGGTGAAGATGGCACATGCAACTAGCGATAATGTTGACAATTTCAGGCATCAAGCAAACCCTAAAGTTGCATTTGTACAGGAAGAAGAAGAGCTTAAAGCTAGAGAAGACAATCTCTCATATACAAAAACTTCCACTAGCACGAATCTTTGGACGGCGAACAGACGATCATGGAGGATACGAAAGAAGAAGCCATGGAACATCAACCTCGTGAACCGCCTAAGGCTGGGTTATCTTCTTGAACGATTAGCTGCTGCACACATGTGGAGAGAGGCCAGCGCGGTTTTGAGTGTTCTGTTATCTGGCAATCCTCGTTCTTACTCCATGTTGGAGGACAGGCGAAACTTTCTGATAGCTATAGAGCTTCAGAGGCGATTTTGTAGGAGGGCAAGTTACCATCATTTGATCAAATCGACTTACGAGGTTTGGTTGCATAAACTATCATGGCATAATAAAGGACATAAGGAGAAGCATAATCTGCAACTGGAATTAGCACTATTTTATATTTCTCAAGGGAAATTTGCAGAGGCGCACCACTACACTAGATTTCTTGTTAAAGATGGAAATCAAAGTGAGCCATTTATAAACTTGATCCATGGAATGATACTGTATCAACTATGGTATTCTGAATTGCCTGAAGAGCTCCAAATAAAGGATTTTGATGCTCACACTACATCTGATGCATATGATGTGCCCTTGTTTGATAGTTACATGGAAACTGAAATGGGTGAAAGTTCAAATGGTCATGATGCCGTTGATATTGCCAAAGCGTCTTCTTCATGTTCTTCTGAAAGTTCTGTTGCAAATGAGAAAATATTTATAAAAGAAAAAAGTGACATGCCTAGAAAAAAATCTGGTGATACTTTCTATGTGCTTGACGACATCAGTCAATGCTTTGAAGATAATGATGAGGAAGGGATTCTAAGATATCAGATTAATTTCATCAACTGTTCTATCTATTTTGCACCTGGACTAGATAAAAGTCTGTTACCCATACATTTGAAGCTTTTGACAAAGGACCCGGTTCAGTCAATACAGCTGTTCAGGAATTTGGTTAATGATACGTACAAAGATGCAGTGAAATATTTGCGCCTTGCACTTCATTCAACACCACCAGTGTTAGCTGCTTTAGTTCCTTTGATACAGCTGTTACTACTTGGTGATCAGGTACGTGATGCAATTATTGAGCTCGACAAGTCCTGCAATGAGATAGATTCAGCACTTCCTTATAGAGTAAAAGCCAGACTTCTTCAGTGTTTTTGTAGCAGTCAGATCTCATTGATTTCAAGCTGCTATGAGAGTGCTTTGATCAGGGACCCTTCGTGTAATTATTCAATGGAGAGGTTAATTAAAATGCATAAGACAGGGAATTATAGCACGACGTCGCTGCTGGAGGTGTTAGCCCGACATTTGGATTCTGTTGATGGGATATGCAGTGTTTGGGAAGAGTTTTCGTCTTGCTTTCTCAAGCTTCAGATAGCCACTCTTCATCATTGTGAAGACTGCAGTTCAGCAAACATTGGAGGTGCAACAGCAGGCGACGGTATCCGCTGCATCCGAGTACCTATAATGTTTACTGAAGGGGAAGTTGGGTACACTTGGAGACTTCGGTGTAGCTGGTGGGCAACACGCCACTTCAGCACCACCATATATTTATCTGAGATCCATGCTGGTGAATTGATGCTCTTGCAATTCAAGGCTGCCTGTGCTGTGCATTTGTACGGACCAAACTTTGAATATGTGACTGCTGCTGTCAGCAGTCTTACACAGCAAGGGAAAGCCGAGCAGCTCTCTTTCCTTAACATTCACATCAACAATCCTATGAATCTTAAAGACAATCTGTGTCCTGGTTGA

Network for GWHGAAEX010238

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14929.5	TAF1_subA	85	587	5.90E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.310
SRP064423	SRR2545915	Juvenile tuber	11.460
SRP108465	SRR5643513	five period of Gastrodia elata	5.850
	SRR5643514	five period of Gastrodia elata	5.300
	SRR5643515	five period of Gastrodia elata	5.180
	SRR5643524	five period of Gastrodia elata	6.810
	SRR5643525	five period of Gastrodia elata	6.080
	SRR5643528	five period of Gastrodia elata	5.220
	SRR5643658	five period of Gastrodia elata	6.220
	SRR5643659	five period of Gastrodia elata	6.590
	SRR5643660	five period of Gastrodia elata	6.860
	SRR5643661	five period of Gastrodia elata	6.000
	SRR5643662	five period of Gastrodia elata	6.810
	SRR5643663	five period of Gastrodia elata	6.800
	SRR5643664	five period of Gastrodia elata	6.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.680
SRP279888	Gastro	Gastrodia elata tuber	6.19
	Juven	Juvenile tuber	8.75
	Mother_Gastro	Mother tuber of Gastrodia elata	6.35
	Mother_Juven	Mother tuber of Juvenile	9.55