Detail information of GWHGAAEX010242/evm.TU.scaffold_28.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71281941|ref|YP_266864.1| | 0 | betaine aldehyde dehydrogenase [Colwellia psychrerythraea 34H] |
| KOG | KOG2450 | 0 | Aldehyde dehydrogenase |
| nr | gi|695058757|ref|XP_009417704.1| | 0 | PREDICTED: betaine aldehyde dehydrogenase 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9S795|BADH1_ARATH | 0 | Betaine aldehyde dehydrogenase 1, chloroplastic (Precursor) |
| trEMBL | tr|M0U0R9|M0U0R9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P16120_001} |
| TAIR | AT3G48170 | 0 | aldehyde dehydrogenase 10A9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 2886936 | 2951538 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010242
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00171.21 | Aldedh | 16 | 485 | 9.40E-176 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00130 | betB, gbsA | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006081 | Biological Process | cellular aldehyde metabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016620 | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.230 |
| SRR2545915 | Juvenile tuber | 40.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.540 |
| SRR5643514 | five period of Gastrodia elata | 56.610 | |
| SRR5643515 | five period of Gastrodia elata | 54.680 | |
| SRR5643524 | five period of Gastrodia elata | 55.550 | |
| SRR5643525 | five period of Gastrodia elata | 72.860 | |
| SRR5643528 | five period of Gastrodia elata | 85.910 | |
| SRR5643658 | five period of Gastrodia elata | 79.110 | |
| SRR5643659 | five period of Gastrodia elata | 51.360 | |
| SRR5643660 | five period of Gastrodia elata | 49.630 | |
| SRR5643661 | five period of Gastrodia elata | 53.600 | |
| SRR5643662 | five period of Gastrodia elata | 51.460 | |
| SRR5643663 | five period of Gastrodia elata | 58.870 | |
| SRR5643664 | five period of Gastrodia elata | 52.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 58.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 58.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.38 |
| Juven | Juvenile tuber | 73.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.03 | |
| Mother_Juven | Mother tuber of Juvenile | 59.24 |