Gene detail

Detail information of GWHGAAEX010243/evm.TU.scaffold_28.53

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|312136771\|ref\|YP_004004108.1\|	1.00E-09	glycoside hydrolase [Methanothermus fervidus DSM 2088]
KOG	KOG1958	0	Glycosyl hydrolase, family 38 - alpha-mannosidase
nr	gi\|743766394\|ref\|XP_010913437.1\|	0	PREDICTED: alpha-mannosidase 2x [Elaeis guineensis]
Swissprot	tr\|C0HJB3\|MANA_CANEN	1.00E-86	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|C5Z7K3\|C5Z7K3_SORBI	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR	AT5G14950	0	golgi alpha-mannosidase II

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	2969099	2989794	-

Transcript Sequence
>GWHTAAEX010243 TGTATAATAATTAAAATTTGAAAGTATAAACAATTATGATAAATTGGGTGTTATCTGCTGCTTCCTGGAATTAGGGCTTTGGTATCCAACGAGGCATGCCTCTGTTCTCCGGCAATCGGCGGAGCGCCGGCGCTGCAGCGAGCTTCGGCCATTCCTCTCTCCCAATCGCTGTCAGCCCGAAGCCGCACCGCAAATCCTCTGGATTTCGTAGGCGCAACGCCTTCTTTCTCAACCTCAACTTCTTCTCCATCGGGATCTCCCTCTCTCTTCTTCTCTTCCTTGCTCTCTTCCTACTATACGGAGTTCCGAGCCACCTTTCGTCCTCCCTCTCCTCTCCCTCCATTTCCTGGCAGAAGTCCCACCCTTTTCGCCGCCCCTCCTTTCAGCGCACGAAACCTAACGCTTACGGCGGTGGAGCCGGAGGAACGCCGAGGAGCGGCGCTGAGATATCAGCTGCCTCCGTGGACATCACAACGAAGAATCTCTACGATCGAATCGAGTTTCTGGATGTAGATGGGGGCGCCTGGAAGCAAGGTTGGAAGGTCGAGTACAAGGGGGATGAATGGGATGAGGAGAAGCTCAAGGTCTTTGTAGTTCCGCACTCCCATAATGATCCTGGGTGGATACACACCGTCGAGGAGTACTATAATCTGCAGTCGAGACATATATTGGACACCATCGTGGAATGCCTCTCGAGGGATGTACGCCGCAAGTTCATATGGGAGGAGATGTCATACTTGGAGAGATGGTGGCGTGACGCTTCATTATCTAAAAGGGAAGGTTTTTCTAATCTGGTCAAGAATGGGCAATTGGAAATTGTAAGTGGGGGATGGGTAATGAATGATGAGGCCAACTCACATTATTTTGCTATCATAACTCAGATGATAGAAGGAAATATGTGGTTAAATGATACTATTGGAGTTGCTCCACAGAATTCGTGGTCAATAGATCCGTTTGGTTATTCATCCACGATGGCGTATTTGCTCCGTCGAATGGGATTCAGGAACATGCTTATCCAGAGGACTCATTACGAATTGAAGAAAGAACTAGCTTTGCATAAAAATCTTGAATACATATGGAGGCAGGACTGGGATGTGGATGAAACAACCGATATATTTGTTCACATGATGCCATTCTACTCTTATGATGTTCCCCACACGTGTGGGCCCGAGCCAGCTATTTGCTGCCAGTTTGATTTCGCTCGAATGGGCGGCTTTCGATACCAATACTGTCCTTGGGGATTCAATCCCCAGGAAACAAACGCTGATAATGTGGAGGAGAGAGCTTTAAAGCTTTTAGATCAATACAGGAAGAAATCTACTCTATACCGGACAAGCACTCTTCTAGTTCCTCTAGGAGACGATTTCCGTTACGTTACTGTCGATGAAGCTGAGGCACAGTTCCGGAATTATCAAATGCTATTTGACTACATAAATAGCAATCCCGCTTTGAGGGCAGAAGTCAAATTTGGCACGCTTGAAGATTATTTCAACACTCTTCGTGATGAAGCAGAGAGAAGGAATTTTTCCCGCCCTGGTGAAATCGGGTCAGGAGAGCTAAGCGGGTTCCCCTCTCTTTCAGGTGATTTCTTTACCTATGCTGACAGAAATCAAGACTATTGGAGCGGCTATTATGTTTCGAGGCCATTCTTCAAAGCAGTCGATCGGATACTGGAACACACGCTACGCTCATCGGAGATAATGGCCGCATTTGTTTTGGGGTACTGTCAAAAGTATCAATGTTCAAAACTTCCCTCAAGCTTCACCTACAAGCTGACTGCTGCTAGGAGAAATTTAGCCCTATTTCAGCATCATGATGGAATTACCGGCACTGCAAAGGAGCATGTTATAGAGGACTACGGGCTTCGGATGCATAATTCCCTACAAGATTTGCAAATCTTTTTGTCGAGAGCAGTTGAAGTACTTCTCGGGGACATTCGTGATAAGAGAGATCCCACTGCACTCTTGAAGTTTGAGCCTGTGGAAATGAGATCAAAATATGATGTCCAGCCGTTTCACAAGATTCTTGATATTCATGAAGACCACTCCCATTCGGTAGTTTTTTTCAACCCATTGGAGCAGACTAGAGAGGAAGTTGTTATGATAGTCACATCTACACCAGATGTTGCTGTCATTAGTTCGAGTGGGTCCTGCCTTCCTAGCCAAATATCTCCTGAGTGGCAGTTTTCTAATGACGATAATATTTTCACAGGCCGACATCGTCTTTATTGGAAAGCTTCAGTGCCTCCCATGGGTTTAGAGACTTATTATGTTGCTCGAGGATTCAAAGGGTGCGAAGCTGCTACCCCTGCTGAACTGAAGGTATCTTCAGGATGGCATGCTCTGCCTTGCCCCTCTTCTTATGCTTGCTCAAAACTGGGAGGAGATACATCTGAGATCAGCAATTCACGTCATACCATCATATTTGATACAAAACACGGCTTACTACAAAAAGCAGTACATAAAAATGGCGAAAAAACCGTTATTGGGGAAGAATTATCTATGTATAGCAGCAGCGGCGGCGCCTATCTGTTTAAACCTGCCGGCGATGCCCATCCGATCATCGAGGAGCATGGACGCCTCCTTATATCCAAAGGACCGCTCGTGCAGGAATCTTACTCTATTCCGAAGACTTCTTATTCGAAGACGCCAGTGTCTTACAGCACACGAATCTACAACGGAAAGAACACTCTCCAAGATTTTTTGATAGAAAAGGAGTACCATGTTGACATGGTTGGGCATGAGTTCAATAACAGGGAACTTATTGTCAGATTCAAAACAGATATTGACAACAAGAGGGTTTTTTACTCTGATCTTAATGGTTTCCAAATGAGCAGGAGAGAATCATATGATAAAATCCCGCTTCAAGGCAACTATTACCCAATGCCTTCGCTCGCCTTCTTCGAGGATTCTTTGGGTCACCGGTTTTCGGTGCATTCTAGGCAGTCGTTGGGGGCGGCAAGTCTCAAGAATGGCTGGCTGGAGATCATGTTAGACCGCCGGCTGGTTAGTGATGACGGTCGTGGTTTAGGGCAGGGGGTGATGGACAACCGTCCCATGAATGTGATTTTCCATCTCCTTTTGGAATCCAATGTCTCTGTATTGCCTACTGCTTCCACATCCCTAACCCGACATCCTTCTATCCTATCCCACTCAATTGGCGCCCGCCTGAACTATCCCATGCATGCATTTGTTACCAAGAAAGAGGAGGCAATGCCACCAAAGCTTCTGATAAAGCAGCCCTTTGCTCCTTTGGCTGCACCCTTGCCGTGCGATGTACACATAGTGAGCTTCCAAGCTCTACGTCCGGCTCAGCTGTTTGACCTGGGATTCGTGATTACGCTGCAGAGAAGGGGTTGGGATTCCTCGTACTGTAGAAGGGGCGAATCACAGTGCTCGCTAATGATTGACGAGCCCTTTAATCTTTTCGATCTGTTCAGAGATCTATCGGTTTCGAATTTGAGGGCAACTTCTCTAAATCTCCTTCATGATGATGCCAAATTTGCTCAAGGGGGTAATGTGCTGTTATCTCCCATGGAAATACAATCATTCAAATTGGAGCTGCAAAGACAGGGTTGAGCTCCAGTGAGTGCTATGCTGCCCCCCTTAAATAAGTTTTGTATTGTTGTGCTGTTGTCTTCAGCAGCAAACTTTATTCTCATTGAATCACAGTGACAGGTTAGGTTGAGAGCATGTGATAATAGTTTTGTACATTATACAATAAGGTATGGATGCTGGTTTTAAATTTTGATTCTTGTTGAGCCTCTAGTATTTAGATTTTTTTTATTGTATATTTGTTCTTATAATTTTTTTTTTTTCTGTTACATAGAATCATCACATCAGATATTGCACATTCAGTATACGCTCAAATTAAAT

Network for GWHGAAEX010243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.21	Glyco_hydro_38	163	502	3.40E-100
PF09261.10	Alpha-mann_mid	508	591	1.20E-20
PF07748.12	Glyco_hydro_38C	653	1153	8.40E-68

Protein Sequence

>GWHPAAEX010243
MPLFSGNRRSAGAAASFGHSSLPIAVSPKPHRKSSGFRRRNAFFLNLNFFSIGISLSLLLFLALFLLYGVPSHLSSSLSSPSISWQKSHPFRRPSFQRTKPNAYGGGAGGTPRSGAEISAASVDITTKNLYDRIEFLDVDGGAWKQGWKVEYKGDEWDEEKLKVFVVPHSHNDPGWIHTVEEYYNLQSRHILDTIVECLSRDVRRKFIWEEMSYLERWWRDASLSKREGFSNLVKNGQLEIVSGGWVMNDEANSHYFAIITQMIEGNMWLNDTIGVAPQNSWSIDPFGYSSTMAYLLRRMGFRNMLIQRTHYELKKELALHKNLEYIWRQDWDVDETTDIFVHMMPFYSYDVPHTCGPEPAICCQFDFARMGGFRYQYCPWGFNPQETNADNVEERALKLLDQYRKKSTLYRTSTLLVPLGDDFRYVTVDEAEAQFRNYQMLFDYINSNPALRAEVKFGTLEDYFNTLRDEAERRNFSRPGEIGSGELSGFPSLSGDFFTYADRNQDYWSGYYVSRPFFKAVDRILEHTLRSSEIMAAFVLGYCQKYQCSKLPSSFTYKLTAARRNLALFQHHDGITGTAKEHVIEDYGLRMHNSLQDLQIFLSRAVEVLLGDIRDKRDPTALLKFEPVEMRSKYDVQPFHKILDIHEDHSHSVVFFNPLEQTREEVVMIVTSTPDVAVISSSGSCLPSQISPEWQFSNDDNIFTGRHRLYWKASVPPMGLETYYVARGFKGCEAATPAELKVSSGWHALPCPSSYACSKLGGDTSEISNSRHTIIFDTKHGLLQKAVHKNGEKTVIGEELSMYSSSGGAYLFKPAGDAHPIIEEHGRLLISKGPLVQESYSIPKTSYSKTPVSYSTRIYNGKNTLQDFLIEKEYHVDMVGHEFNNRELIVRFKTDIDNKRVFYSDLNGFQMSRRESYDKIPLQGNYYPMPSLAFFEDSLGHRFSVHSRQSLGAASLKNGWLEIMLDRRLVSDDGRGLGQGVMDNRPMNVIFHLLLESNVSVLPTASTSLTRHPSILSHSIGARLNYPMHAFVTKKEEAMPPKLLIKQPFAPLAAPLPCDVHIVSFQALRPAQLFDLGFVITLQRRGWDSSYCRRGESQCSLMIDEPFNLFDLFRDLSVSNLRATSLNLLHDDAKFAQGGNVLLSPMEIQSFKLELQRQG

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH38

KEGG pathway

KO	Enzyme	pathway	mapID
K01231	MAN2	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006013	Biological Process	mannose metabolic process
GO:0003824	Molecular Function	catalytic activity
GO:0030246	Molecular Function	carbohydrate binding
GO:0004559	Molecular Function	alpha-mannosidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.450
SRP064423	SRR2545915	Juvenile tuber	67.080
SRP108465	SRR5643513	five period of Gastrodia elata	28.500
	SRR5643514	five period of Gastrodia elata	33.850
	SRR5643515	five period of Gastrodia elata	31.220
	SRR5643524	five period of Gastrodia elata	32.830
	SRR5643525	five period of Gastrodia elata	53.250
	SRR5643528	five period of Gastrodia elata	47.290
	SRR5643658	five period of Gastrodia elata	56.130
	SRR5643659	five period of Gastrodia elata	44.560
	SRR5643660	five period of Gastrodia elata	54.030
	SRR5643661	five period of Gastrodia elata	47.490
	SRR5643662	five period of Gastrodia elata	45.400
	SRR5643663	five period of Gastrodia elata	47.580
	SRR5643664	five period of Gastrodia elata	50.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	63.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	68.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	85.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	96.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	80.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	68.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.820
SRP279888	Gastro	Gastrodia elata tuber	55.29
	Juven	Juvenile tuber	43.61
	Mother_Gastro	Mother tuber of Gastrodia elata	27.49
	Mother_Juven	Mother tuber of Juvenile	40.49