Detail information of GWHGAAEX010245/evm.TU.scaffold_28.58
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
COG | gi|407647261|ref|YP_006811020.1| | 2.00E-08 | signal transduction protein [Nocardia brasiliensis ATCC 700358] |
KOG | KOG0027 | 3.00E-29 | Calmodulin and related proteins (EF-Hand superfamily) |
nr | gi|356562975|ref|XP_003549743.1| | 7.99E-45 | PREDICTED: calmodulin-like protein 5-like [Glycine max] |
Swissprot | tr|Q9LNE7|CML7_ARATH | 8.00E-30 | Calmodulin-like protein 7 |
trEMBL | tr|I1MU60|I1MU60_SOYBN | 3.00E-45 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G12040.1} |
TAIR | AT1G05990 | 3.00E-29 | EF hand calcium-binding protein family |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000027 | 3240626 | 3248864 | + |
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Transcript Sequence | |||
Network for GWHGAAEX010245
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|---|
Module1 |
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF13499.5 | EF-hand_7 | 59 | 117 | 2.10E-12 |
PF13499.5 | EF-hand_7 | 134 | 198 | 2.90E-11 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
-- | -- | -- | -- |
Gene Ontology
GO term | Ontology | Name |
---|---|---|
GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 15.650 |
SRR2545915 | Juvenile tuber | 5.110 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.820 |
SRR5643514 | five period of Gastrodia elata | 4.780 | |
SRR5643515 | five period of Gastrodia elata | 3.450 | |
SRR5643524 | five period of Gastrodia elata | 3.340 | |
SRR5643525 | five period of Gastrodia elata | 113.670 | |
SRR5643528 | five period of Gastrodia elata | 57.230 | |
SRR5643658 | five period of Gastrodia elata | 67.440 | |
SRR5643659 | five period of Gastrodia elata | 5.090 | |
SRR5643660 | five period of Gastrodia elata | 3.090 | |
SRR5643661 | five period of Gastrodia elata | 3.350 | |
SRR5643662 | five period of Gastrodia elata | 5.810 | |
SRR5643663 | five period of Gastrodia elata | 3.000 | |
SRR5643664 | five period of Gastrodia elata | 9.670 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.600 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.070 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.370 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.840 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.800 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.640 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.550 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.550 | |
SRP279888 | Gastro | Gastrodia elata tuber | 7.55 |
Juven | Juvenile tuber | 7.33 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 16.22 | |
Mother_Juven | Mother tuber of Juvenile | 9.40 |