Gene detail

Detail information of GWHGAAEX010248/evm.TU.scaffold_28.63

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0712	2.00E-23	Molecular chaperone (DnaJ superfamily)
nr	gi\|641866899\|gb\|KDO85583.1\|	2.41E-25	hypothetical protein CISIN_1g014800mg [Citrus sinensis]
Swissprot	tr\|Q04960\|DNJH_CUCSA	2.00E-25	DnaJ protein homolog (Precursor)
trEMBL	tr\|A0A067H0R6\|A0A067H0R6_CITSI	9.00E-26	Uncharacterized protein {ECO:0000313\|EMBL:KDO85583.1}
TAIR	AT3G44110	2.00E-23	DNAJ homologue 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	3553174	3569589	+

Transcript Sequence
>GWHTAAEX010248 ATGGGCCTCCTCTCGGCGTACCCTATGCAGGTATGCCGGGCTCGAGTTCACGCGTTGCGTGCTCGAGAAGAAGGGGTAGGCATGGGCCCGCCAGTGCTCGCGCGGCTTTTCCGCAGTCCTTGCATCGCAGAAGTCGTGGACCCCAAGGCCACGTGTCGGGCTCCTGTCGCCGACAGCCTGCCAGTGGGTCCCGCACCGCGTCAGCGGTCGCTGTCAATCCCGACAGCGAGCCCAGCCCGCAACTTCGCATCCATCGGGACGCTACTACGCGTCTTCAGCGGGCCCCGCAGCCATAATTTCTTACAGAAAAGTTTCAGCTATTTCCTCCCGCTCGTTCCCACCGAAGAGTTCCGCTCCGACTGTTCCGACCGAAGGCGTCAGGACCCGACGGATCGCGTCCCGTTCCGACCGAAGGCGTCACGACCTGACGGAAGGCGTCCCGTTCCGACCGAAGGCATCAGCGAGCGAGCGAAGACGCCTATCAAAGACTGCACAGATTTTAGTTGCCAGACAGTTAATATTGAAGGTTCTCGCCTTTTGTCTTTTCAGTATAACAGAGAGTCATCACAGAAGTGGCGCCGTGTGCTGCATTTCTCTCGTGATTCTGATGACATCGATGTTTGCAATGCTCAATCTTCTTCTGTCTTTCTCAGATCAATAGAGAGGGAGGAGGAACAAATGGATGACGGTCCTTCATCATCAGCAAATGTCGAATGGAGCTCCCATTGGAATTTAGGATTGCCGGATGGTGGATGTGCCTTCAACTCCGAAGCATGGGATGAGGCATCCGAGGGATGGCTTGACGTCTGCCTTGATTCAAACTTGATGCAGTGCAAAATAGATGAGGCTGCAGCTCCTGTAAATGACCAGTTCAATATCATTGAAGATCTCTATCAAAGCAGCCCTTTTGATTTGATTATTGTTCCTGCAGGGAATCCTTCCCTTGAAATTAATGCATCTTTAAACGATTGTTCCTATGAAGATGAACTCCATGCAGCACTCAAACAGCCTGACACGGTGACCGGAGACATTGTCTTTGTTTTGCAATTGAAAGAACATTCAAAATTCAAGAGAAAGCATGACGACCTGTATGTGGATCACACGCTCTGCCTCACTGAATCCCTTTGCGGCTTCCAATTCGCCTTAACTCATCTTGATGGCAGGCAGCTGCTCATCAGATCAGTCAAAGCAGAAGAAAATGAAGTGGAGGAAGGGTACTTGGATGAGTTATCTGATGGGTTTGAGAAGATCACAATAGAAGAGAAAGAGAGGACTGCAACTCGTGTGTTTAATGGCTTCTTCATCTTAAACAATGTGCGGGACAATGCAAAGCTATGGTGCAATTTCTGTGTTGATTCAATGACTGGTCTATGTGGAGAAAATGGGGAAATTAATCAGAATTCTATTAAGGTGAAAGCACAAACAATGAAGCAGCTTGGTGGATCTCTTGATGGGCGCTTGTAA

Network for GWHGAAEX010248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01556.17	DnaJ_C	336	391	3.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	Biological Process	protein folding
GO:0051082	Molecular Function	unfolded protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.690
SRP064423	SRR2545915	Juvenile tuber	16.260
SRP108465	SRR5643513	five period of Gastrodia elata	4.620
	SRR5643514	five period of Gastrodia elata	4.640
	SRR5643515	five period of Gastrodia elata	4.210
	SRR5643524	five period of Gastrodia elata	5.000
	SRR5643525	five period of Gastrodia elata	2.900
	SRR5643528	five period of Gastrodia elata	3.420
	SRR5643658	five period of Gastrodia elata	3.560
	SRR5643659	five period of Gastrodia elata	8.160
	SRR5643660	five period of Gastrodia elata	8.890
	SRR5643661	five period of Gastrodia elata	7.110
	SRR5643662	five period of Gastrodia elata	7.830
	SRR5643663	five period of Gastrodia elata	10.530
	SRR5643664	five period of Gastrodia elata	8.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.670
SRP279888	Gastro	Gastrodia elata tuber	4.37
	Juven	Juvenile tuber	5.32
	Mother_Gastro	Mother tuber of Gastrodia elata	3.65
	Mother_Juven	Mother tuber of Juvenile	5.95