Gene detail

Detail information of GWHGAAEX010251/evm.TU.scaffold_28.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|476001809\|gb\|AGI62046.1\|	0	AP2-10 [Erycina pusilla]
Swissprot	tr\|P47927\|AP2_ARATH	5.00E-109	Floral homeotic protein APETALA 2
trEMBL	tr\|M9QTQ9\|M9QTQ9_9ASPA	0	AP2-10 {ECO:0000313\|EMBL:AGI62046.1}
TAIR	AT4G36920	2.00E-108	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	4611187	4614974	+

Transcript Sequence
>GWHTAAEX010251 AAGAAATCCGTTTTTCTTTTGCCTCTTCCTCAGAACCTAATCCTAAAAATAATAAAAAGGTTTTTCGTGCCCTTTTAAACGGGAACCTTAATGAAGCGAGCATTCGAAGAAAACGAAGGAGAATGAATTGATTTTTTTTTTAAATGTTATTAATGGGAAGAGTATCTCTTGAGACTGGATGCCGTTTTCCATTTATATAATGCTCTCGATCACCCCAATCGTTGGGCGGCACTAGGATTGGCAAAAGCGGCCACTTTGCGACATACAATCCCTTCCGCTCCCACCTTTTTGTCTCTCCTCCCTCTCCATTCATGATCTCATCCTAGGATTTAGCAGTCGAAGAAAGAAAGAAGGGGTATTTGACACAAGAGATTTTTTAATGGCTGGAGTGAGCTGAGCGCTGAAGCTGATTGAAACATGTGGGATCTCAATGGCTCGCCGGAAAATTCGTGGCTGTGGGAGAAGGGGAAAGAGCGGGAGTCCGTGGTTTCGTCCACAGAAAATTCGAGCTCTTCGGCGGTTTTCGTGGAGGTATCGGACGAAGGGGAGGACAACTCTGGGGGAAAGATCTTTGTGACTCGTCAGTTCTTCCCCGCTGGAGAGGCGGCAGAGCAGTGCCCTGGTGATGTTCCTCCGAGAGCGCACTGGGCGGAGGTTCAGTTCCGCCCGCCGGAATCCGTAACTCCGGCAACGCCTTCTGGGCAGCCCTTGAAAAAAAGCCGGCGGGGGCCCAGGTCCAGAAGCTCGCAGTACAGGGGAGTCACGTTTTACCGGCGAACTGGCCGCTGGGAATCCCACATATGGGATTGTGGAAAACAAGTATATTTGGGAGGATTTGACACTGCCCATGCGGCTGCTCGAGCGTATGATCGAGCAGCGATCAAGTTCCGTGGTGTGGACGCGGATATAAACTTTCGCTTGGAGGACTATGAAGATGATCTGAAGCAAATGGGTAATTTGACGAAGGAAGAATTTGTTCATGTGCTCAGGAGACAGAGCACTGGCTTTCCAAGAGGAAGCTCTAAATACAGGGGAGTCACTCTTCACAAATGCGGCCGATGGGAAGCTAGAATGGGCCAATTTCTGGGGAAGAAGTATGTCTACTTGGGTCTTTTTGATACTGAAGTTGAGGCAGCAAGAGCATATGACAAGGCCGCCATCAAGTTTAATGGGAAAGATGCTGTGACAAACTTCGATTCCAGCATCTATGCTGATGAGTTAGGTTGCTCGACTAGCCATGCTGAGCATAATCTTAATCTGAGTCTCGGGAGTTCGGGAAGCACGCCGAGCCCGATGGAGGAGGAGAGCTCTGGATGTAGAGGCGATCATCAATTCCATAGCAATACCACAAATCTTAAGGTGCTGCCGGAGATTGAGGGTAGGTTCAGTCTACCCCTCGGGCATCATCACGTGAATATGCTGAGGCAGCAGCAGCTTTTGCAGCCACCGGCAGCTGCCGTCGGATTCCAATTCATCCGCCACCAGTTCTCTCTTCCTTCCGGTTATCATCAATGCCCCGGCGGCGACCTCGCTGCAGCGAGGGGCGGAGAAGTTTGTCTTTCGCTGTCGGTGGACGCGGGCGCAGGCAGCGCCGTCCCCCAATCGTTGGCTGCAGCATCATCAGGATTCCCACAGCAGGCAGTGAAGACTTCTTACAGTTGGCTGCAAAGGAACGGGCTGCAGTCATGGGGCAGCAGGCCCTGAGTCTGAACCCGGCCCGGGTGGAAACAAAGCAATTTAGATTTTGTTGGCGAGATACTTGACACAGCAGAAATATGGCAGCGCGTCGCCCCTGTTTTATTGTTCTACTTCTTTTTTCTGTTTTTTAATTTGCAATTTTGGTTGCAAACATTCTGCTGTGAGGGGTGAGGTGAATGAATTCAATGATTTGTGCTGCATCATTAAAGTCGCGACCTGTGAAAGGAAGAATCAGAATTGGGTTTCCAATTTTGGGGGATGAAATAATTGGTGGGAGGGTGAATAGTGCCCTGCCTTTTGAAGGGGGAATAGGGGCGAATTTGACAATAAGAATTTGTGGGGAGGGGGGAAATGATAAGTGGAGGGGGGTGAACGATGAGAGCTTCAATTGGGGGTGAAATTAGGACGTGGAGTGGTGATGGATGACGTGTCGCTATCGTCGGTCCTTCGAATCAGTTCACTGCGGGCTCATGCAGTCAGACAAAAATAAATAAATTAATAAAAGAGAAAAATAAAAAGTGGGCTATTATGACGAGAGGGACATCTCACCGCAGAGGCCCAATACACACAGTACCAAAACACAGCCCTTTATCTCTCCCTCAATTTATCTCTCTCTAATTGGCAACTTGCATGTGTTGCGATATTATTATCTAAATGCATTATTAAAATCAGCCTCGAAACTTAATGCCTTTTTAACAACTGAATGCTAAGCTTATTTTTATTATTAGTTTTTAGGATAAATAATTGCGACACCTTATCCACATAATTTCTTTTTCTCCCAATATGATCAATTCAGAATAACAGTTGATAAAATATTTAAATTTAATATTTTTTTAAGGTACTTGAGTGCTTACTCCGGCATCAATATATTTTGTCATGCTCAATGTATGTTGGTGCCATTGTCTCATTCTAAGCTTGTTTGATTTGATCGACAAGAAACGAGCCGTCTCCGAATAAATACTTTTGAGTATGATTTATAGTGCATTGAATATGAACTGGTTTTAGTTCCCGTCGTCGATGATGACTCCAAACTAAGTTCGGGCTTTTGAGCTCCAAAACTCGTGAGCTTGATGATCGGATGGCGCCATCTTGTCGCTTTCACTAAGGATGATTTTATAGGTGTATGCGTGCTTTATTATATGCAAGCTTTTGAGTCAAAAGGGCTGCATTTTTTTTTGTTTAATTATCAGATGCTTTGCTACAATGTCAGCAATGTATCTGCTATACTATCTCTTTCTTTGAAGGATTTCTTTACCGCACTTTACATTCACTAATAATAATTTAAAAGATATAAAGAACCACTCATTGTTGGATAGAAGGCTCGAATGATTTTTGCTATTCACATTTACCATAGAGCACATATTCATGAAAGTATGCAATTTTAGCTAATAATAATGTAAATGTATCTTTTTGATAACTAGG

Network for GWHGAAEX010251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.19	AP2	110	159	5.50E-09
PF00847.19	AP2	202	252	3.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.320
SRP064423	SRR2545915	Juvenile tuber	13.230
SRP108465	SRR5643513	five period of Gastrodia elata	28.780
	SRR5643514	five period of Gastrodia elata	18.020
	SRR5643515	five period of Gastrodia elata	21.050
	SRR5643524	five period of Gastrodia elata	19.300
	SRR5643525	five period of Gastrodia elata	9.460
	SRR5643528	five period of Gastrodia elata	15.580
	SRR5643658	five period of Gastrodia elata	8.670
	SRR5643659	five period of Gastrodia elata	35.680
	SRR5643660	five period of Gastrodia elata	38.540
	SRR5643661	five period of Gastrodia elata	37.640
	SRR5643662	five period of Gastrodia elata	38.530
	SRR5643663	five period of Gastrodia elata	30.410
	SRR5643664	five period of Gastrodia elata	28.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.680
SRP279888	Gastro	Gastrodia elata tuber	16.87
	Juven	Juvenile tuber	76.66
	Mother_Gastro	Mother tuber of Gastrodia elata	14.75
	Mother_Juven	Mother tuber of Juvenile	23.81