Detail information of GWHGAAEX010253/evm.TU.scaffold_28.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116747535|ref|YP_844222.1| | 3.00E-12 | RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB] |
| KOG | KOG0123 | 0 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|719970147|ref|XP_010270536.1| | 0 | PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|P42731|PABP2_ARATH | 0 | Polyadenylate-binding protein 2 |
| trEMBL | tr|M0TWF6|M0TWF6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P00990_001} |
| TAIR | AT4G34110 | 0 | poly(A) binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 6045624 | 6064103 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010253
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 34 | 104 | 1.10E-19 |
| PF00076.21 | RRM_1 | 122 | 190 | 4.80E-20 |
| PF00076.21 | RRM_1 | 213 | 281 | 3.80E-23 |
| PF00076.21 | RRM_1 | 316 | 383 | 6.20E-18 |
| PF00658.17 | PABP | 562 | 628 | 4.50E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 414.660 |
| SRR2545915 | Juvenile tuber | 481.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 242.810 |
| SRR5643514 | five period of Gastrodia elata | 198.720 | |
| SRR5643515 | five period of Gastrodia elata | 188.440 | |
| SRR5643524 | five period of Gastrodia elata | 186.910 | |
| SRR5643525 | five period of Gastrodia elata | 210.260 | |
| SRR5643528 | five period of Gastrodia elata | 176.300 | |
| SRR5643658 | five period of Gastrodia elata | 212.030 | |
| SRR5643659 | five period of Gastrodia elata | 326.020 | |
| SRR5643660 | five period of Gastrodia elata | 343.180 | |
| SRR5643661 | five period of Gastrodia elata | 331.050 | |
| SRR5643662 | five period of Gastrodia elata | 363.670 | |
| SRR5643663 | five period of Gastrodia elata | 333.000 | |
| SRR5643664 | five period of Gastrodia elata | 454.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 294.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 228.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 270.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 339.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 274.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 307.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 291.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 277.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 218.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 231.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 223.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 223.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 357.68 |
| Juven | Juvenile tuber | 387.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 116.54 | |
| Mother_Juven | Mother tuber of Juvenile | 221.85 |