Detail information of GWHGAAEX010255/evm.TU.scaffold_28.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14574.00E-43RNA binding protein (contains RRM repeats)
nrgi|743821436|ref|XP_010932032.1|7.55E-103PREDICTED: U2 small nuclear ribonucleoprotein B'' [Elaeis guineensis]
Swissprottr|Q8H1S6|RU2B2_ARATH7.00E-06U2 small nuclear ribonucleoprotein B'' 2
trEMBLtr|M0TZE2|M0TZE2_MUSAM4.00E-97Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P11330_001}
TAIRAT2G422404.00E-43RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002769087746952802+
Transcript Sequence

Network for GWHGAAEX010255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1601233.30E-11
PF00076.21RRM_12052663.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.190
SRR2545915Juvenile tuber16.170
SRP108465SRR5643513five period of Gastrodia elata22.520
SRR5643514five period of Gastrodia elata22.490
SRR5643515five period of Gastrodia elata23.020
SRR5643524five period of Gastrodia elata20.710
SRR5643525five period of Gastrodia elata41.340
SRR5643528five period of Gastrodia elata47.670
SRR5643658five period of Gastrodia elata37.650
SRR5643659five period of Gastrodia elata24.150
SRR5643660five period of Gastrodia elata23.720
SRR5643661five period of Gastrodia elata24.750
SRR5643662five period of Gastrodia elata17.410
SRR5643663five period of Gastrodia elata20.880
SRR5643664five period of Gastrodia elata20.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.940
SRR6049655Rhizomagastrodiae_C368-T10_good_124.680
SRR6049656Rhizomagastrodiae_C368-T07_good_116.790
SRR6049657Rhizomagastrodiae_C368-T07_good_117.490
SRR6049658Rhizomagastrodiae_C368-T04_good_114.430
SRR6049659Rhizomagastrodiae_C368-T04_good_113.170
SRR6049660Rhizomagastrodiae_C368-T01_good_117.680
SRR6049661Rhizomagastrodiae_C368-T04_good_113.880
SRR6049662Rhizomagastrodiae_C368-T01_good_117.530
SRR6049663Rhizomagastrodiae_C368-T01_good_118.040
SRR6049664Rhizomagastrodiae_C368-T10_good_119.230
SRR6049665Rhizomagastrodiae_C368-T10_good_119.230
SRP279888GastroGastrodia elata tuber 32.70
JuvenJuvenile tuber26.56
Mother_GastroMother tuber of Gastrodia elata 30.93
Mother_JuvenMother tuber of Juvenile 36.38