Gene detail

Detail information of GWHGAAEX010258/evm.TU.scaffold_280.2

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743861463\|ref\|XP_010943285.1\|	6.25E-76	PREDICTED: uncharacterized protein LOC105061054 [Elaeis guineensis]
trEMBL	tr\|M0SMI8\|M0SMI8_MUSAM	2.00E-65	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P09710_001}
TAIR	AT5G55820	3.00E-22	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000273	70455	103074	+

Transcript Sequence
>GWHTAAEX010258 GGGGCCCCCTGCACTAGTCTTCGTTTTTATATTTCGAAATCGCGAAACCCTACGAAACATGGGATCGCAGTATTTGAGCGATTTAGCGTTGTTCTTCACACATTTGCGGGATGCGAGGGTATAACAACGATTTGAATTTACGTTAAGAGGATTTGAGGGTTTACACAAGTAAATCCTGCAACCAAAGTGGTTGTTATCAAATTCACGTGTAATTCTCGATTCTTGATCTTTGACAGCCAAAATTTTTTATGCCGGTCACCATTTGTCTCTCTCTCTCTGTCCCTTAAGGGTTTCGTTTCCATCGAACTTCAAAGCTCCTGATCCCAGAAAGATGTCGATAGAGGGCCTATTCATTGAAATATTCGACCGGAAAAGCCGCATCGAGCGCCAACTCTATCAACAGTTGGAATCGTACGCTGAATCCCTTTCCTGTAACGTTATTGCCGATGGCAAGCGGCCCCCTCCGTGGCTGTTGAAGATGATTCCAGGAGCCACCTTTTGTCCTGATCCTGGAGATTGTAGACAGCCCTCACCTTCCTTTTGGAATTCTAAGAGAAAAATTTGCAGTGATACTTGGGAATTGATGCAAGGAAACTTACTTACAGAAGATTTTAATTTTAACTCAAAGCATAATTTGGTGATTGCTTCAACATTGGATAAAAAAAAAATGAGGCTTGATATTGTAGATGAAATTCAGAATCTCTATTCAAGGGATGATGTTATGCTTACTAACCTTAGGACATTCGATTCAGAAATTCATTGCACGTCTCAGCAAGTTGAAAATTTGGTTTCATGCGTGGATAAAGTTCGAAAGGAAACCTCCATGAGCCATGATGGTTCTCATGACGGAGAAGAGCCATGCAATGCACCACAACGTTTGTGTGGATATGATATTAATCGGGATAATGCCTTTGACAAAGATGAAGACATTCTCAAACTTTCAAAAGAACGAGTATCTACTTCTTCCTGTTTAGAAGAAGTTCCCAGTGTTTGTCAAGATGGGTCTGAAGAGGAGAAAGAGCCATGTGATGCACCACAATATTTTTGTGAATGTGATATTAATCATATGTCAGATATTACTGGTGTTAAACACGATTGTGATGAAATCATGCTCGAGGATAAAAAACTTTTCTATATGAAGGAGGGTAATGCATTCGACAAACATGATGGCGTTTTCAAGCTTGCAAAAGGAAGTGTTTCTTCTGTTTCCCATTTTGTAAAGGAATTTCCCAGTGAATCCTTTTTGGATGAAGCTAGGCATTGCCCTAGGGATGAAGTTAAGCATGTCAACCTTGTGTCAGCGGAGCCCCGCATTTCTTACACTTCTCCCCAAATTCCTTGCACTTCTCTTGGCCCTGAAAAACTATTTTCAAATGTGGATACATATGGAAATAAAATTCATGGAAGTACTGATCACCTTAGTGTTTCCGTAGAAGGTGATGAGCCAAATAGTGGAACGCAACATTTGCACAAAAGTGATATCAGCGGAACATCATATACTGCCAATGTTACTTGTGATGTGACCATGCTTGACTATATGGAATTTAGTGCAGATCTGACAACTGAGATTGATATCTCCAAAGATGTCATCATTCCCAGTCTAGCAAAAGAACGAATTTCTGCCACTCCCGGCATAATAGAAGACATTGTTAGTACCTGTTCCAGAGATGAAGTTAAAACCTCCAGCGTGATGCCATTACAATCAGAAATTTGTCACACATCTAAGAGCGTTGAAAATTTTTTTGTATATATGGATACATTTGAATACAGCCGTTCCCAGAGTATTGGTTGCCATGATGGGCATGTAAAGAGCACGGATTCTGTTCAAAGTTTGCACAGCTGTGATATTAGTATAACAGATATTGCAGGTGATAAGCCCAGTCGTGATGATCTCATGCTTGAGTTCGAGTGTTCTAGCAACGATTTTTCACGTACACCAGATATTAATGTTGTCTTCAAAGAAACTGGCATTCCCAGCTTTGCAAAAGAACGAGCTTCTATAGCTTCTCACGTTATAGGAGATTCCTGTTCAGATGATGAGGATAGATTGACCTACTTTTTGCCAACTAAATCTGCAATTCATCACAATTCTCGTTGCAGTGTTGATACATTAAAAAATAAAGCTTCTGTGAGTCCTGGCCAACATGATAAATCTGAATTGTGCATGGAACCATATGATAGCTTATATGGCTGCAGTACTACTTGCTTATCAGGCGCTTTTTGCTTCAAGTCTAATTGCGATGAGACCATGCCTGAGTTTGAGAATTTTGACATGGATCTTTCCAATGAAGTGGGTAATGTTGTCAGCAAAAGTGCTGACATTTCCAGTCTTGCAAAAGAACGAGCCTTTGCTCTTAAACAGTTGCATCAGTCAAGGATACTTCTCACCCCAATGCCTAAGACTTCCATTTTGGATAATATGTGTATCATTTCAGATGGTGTTCAATCATTACCTCTAGAAACACTCAAGAACATGGACTTCAATTTTTCTATGGAGCATAATAACTGTGACAATAAACATTTTATAGCAAGTTCTGGCATTAAGATGCTGGACATATTTTGCAATGATGAATCACAGTTGGATGGTCTTGATCTTGGAAGCGCACAATCTCTATCTTCTTCAAGTGCTAGATTTGGTTCAGAGTTGCAGAATCCTCCTTTAAGCCCACCAGCTATAAATTTTAATTACATAAGCCTCACAAAGAAAAAGAGTCATAGTCCAAAGAAAATGAGCTCTAATCCAGAACTTGTATGTTTTCGTATTGATGAAAATTCTCCGACTACTGAAGAAAATGTTGATGTTGCTCAATTGGGTTATTCTGCTCGTGGAGCTATTTCAAGAAATAATGAAATATCAAAAAATAGCAAACCTTTGTCTGATGTGACTTCATTGTATCAAAATGACATGCGCTTTCATTCCGGCTTTAAGGAATTTATGACAAGGGAGAGCTTGGAATCTGTAAACTCAGATGTAGGACCCGGCCTTGGGTTTGAATGTGAAGGCAGAGAGTCTAATGTAGAGAATAAGGAGAATCCTAGTCACGTGAGCACATCCAAAGAACTGAAAGCTTCCAGAACAGGAAGAAAATTCTCTGAAAGGTCAAGGGTATCTTGTAGATCAAGTAAGAGAATTATGAAACAAAACTTAAATAAAGTATGCAAATCATCTAATATTCTATCCAGCATGTCTTCTTTTGTTCCTCTAATCCAGAAAAAGCAACACCAAGATCCGGCATTGCTAAAGAAGAAAGACATAAAAGTTAAGGCCCTGGAAGCTGCTGAAGCTGCCAAACGTCTTGAAGATAGGAAGAAAATAGAGCGTGCGATGAGAAAGGCTGCAGTGAAGCATGAGCTGGAAAAATTGAAACAAGAAAATGCAAAGCAATTGAAACTTAAACAAAGTCAAAGGGATGAAAAGAGGAGGAAGGTAGATGCTGTAGCAAGGAAGAGACAAAGGGAGGCAGAGGAGAAAAAAATTATGGAAAAGAAAAGGCAATGCATTGAAGAAAAAAGAACGCTGCAGAGAGATCGCTTGGACAAGAAAGAGGAGAAAGATATTCGGCAGAAAGCCCTGCCTAAGGAAAGAAAACAGAGTAATAAACAATATAAAATGGAAAGAGGAGGTGATGCTAGTCCAAGTCAAATGGTTGCAGAAGTGCAGCCGTATGCCATCCAACCCGTATCTATTGAAACCACAGTGGGTGATGGTAGAATTCAAGCTCTAGAGGTCTTTGATGAGCACTTTGTAAAGGGAGCTGACGTCTCAAATTCCTTAATAGAAGTAATAGAAGAAGGCATTACTGTTACACAAAAACCTCGGGAATTGCAGTCCTATGAACTATCTCCGTACCAATCGTCTGATGATGAAGATATGGAGGAAGACAGCTGGCGCAGCAAGAAGCCCATTCCTGTGTGGGCAAGAAGAGAGAACTTAAGTGAGATTATTCTGGCCAATCAAAACTTGGATCCAATGGCGATCTTTAGCCGCAAAGGGTCTTTCAATATTTCTCAAGCTTTCCGCACTCATGCTCTCTTGCGCGGCTGACAATTTGATGCAAAGCTCTCAAGGGGCTCAAAAAGGGGGAAAACATCGACTGGACAGTATCTTAGCATTGAGGCTCAAAAAGTTGTTTTTTCTTCGGGTTATTGAGACCACAGCTGGATGCATATTTAGTATTGTTCCAGCATTGGGGCTCATATCTTAGCTCCCCGCTGCACTCTGACTGCTGCTCCCAACACAAGCATTGCACTTTTTGACTCGCTAGAGAAGCAAGTGTGAGGGATTTCCCATATATATATATATATTCATTTAACACAATTTTATGTGGGCATTTGACCCGTAGACTAACAGCTAGTTTGATATTTAAATGTATTGATGATACACAGATAATGCCCTAATGGAAGGTTTCTTGCACTGAATTTCTTATCGGTTATAGCTACGCTCAGACAGTATGTATTGATAGAAGTAAAAAGATACAGATGCTAAATTCATGATTTTAAAGATTGGGCCTTGGATGTGTATATACTAAAGATTTTGGAAGCCATTGATAAGCCCCTATTAAATCAC

Network for GWHGAAEX010258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03941.14	INCENP_ARK-bind	1175	1229	3.10E-09

Protein Sequence

>GWHPAAEX010258
MSIEGLFIEIFDRKSRIERQLYQQLESYAESLSCNVIADGKRPPPWLLKMIPGATFCPDPGDCRQPSPSFWNSKRKICSDTWELMQGNLLTEDFNFNSKHNLVIASTLDKKKMRLDIVDEIQNLYSRDDVMLTNLRTFDSEIHCTSQQVENLVSCVDKVRKETSMSHDGSHDGEEPCNAPQRLCGYDINRDNAFDKDEDILKLSKERVSTSSCLEEVPSVCQDGSEEEKEPCDAPQYFCECDINHMSDITGVKHDCDEIMLEDKKLFYMKEGNAFDKHDGVFKLAKGSVSSVSHFVKEFPSESFLDEARHCPRDEVKHVNLVSAEPRISYTSPQIPCTSLGPEKLFSNVDTYGNKIHGSTDHLSVSVEGDEPNSGTQHLHKSDISGTSYTANVTCDVTMLDYMEFSADLTTEIDISKDVIIPSLAKERISATPGIIEDIVSTCSRDEVKTSSVMPLQSEICHTSKSVENFFVYMDTFEYSRSQSIGCHDGHVKSTDSVQSLHSCDISITDIAGDKPSRDDLMLEFECSSNDFSRTPDINVVFKETGIPSFAKERASIASHVIGDSCSDDEDRLTYFLPTKSAIHHNSRCSVDTLKNKASVSPGQHDKSELCMEPYDSLYGCSTTCLSGAFCFKSNCDETMPEFENFDMDLSNEVGNVVSKSADISSLAKERAFALKQLHQSRILLTPMPKTSILDNMCIISDGVQSLPLETLKNMDFNFSMEHNNCDNKHFIASSGIKMLDIFCNDESQLDGLDLGSAQSLSSSSARFGSELQNPPLSPPAINFNYISLTKKKSHSPKKMSSNPELVCFRIDENSPTTEENVDVAQLGYSARGAISRNNEISKNSKPLSDVTSLYQNDMRFHSGFKEFMTRESLESVNSDVGPGLGFECEGRESNVENKENPSHVSTSKELKASRTGRKFSERSRVSCRSSKRIMKQNLNKVCKSSNILSSMSSFVPLIQKKQHQDPALLKKKDIKVKALEAAEAAKRLEDRKKIERAMRKAAVKHELEKLKQENAKQLKLKQSQRDEKRRKVDAVARKRQREAEEKKIMEKKRQCIEEKRTLQRDRLDKKEEKDIRQKALPKERKQSNKQYKMERGGDASPSQMVAEVQPYAIQPVSIETTVGDGRIQALEVFDEHFVKGADVSNSLIEVIEEGITVTQKPRELQSYELSPYQSSDDEDMEEDSWRSKKPIPVWARRENLSEIILANQNLDPMAIFSRKGSFNISQAFRTHALLRG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.010
SRP064423	SRR2545915	Juvenile tuber	5.560
SRP108465	SRR5643513	five period of Gastrodia elata	24.110
	SRR5643514	five period of Gastrodia elata	19.960
	SRR5643515	five period of Gastrodia elata	20.020
	SRR5643524	five period of Gastrodia elata	20.670
	SRR5643525	five period of Gastrodia elata	22.560
	SRR5643528	five period of Gastrodia elata	16.490
	SRR5643658	five period of Gastrodia elata	18.750
	SRR5643659	five period of Gastrodia elata	25.860
	SRR5643660	five period of Gastrodia elata	27.890
	SRR5643661	five period of Gastrodia elata	24.910
	SRR5643662	five period of Gastrodia elata	30.670
	SRR5643663	five period of Gastrodia elata	31.930
	SRR5643664	five period of Gastrodia elata	36.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.260
SRP279888	Gastro	Gastrodia elata tuber	25.59
	Juven	Juvenile tuber	29.17
	Mother_Gastro	Mother tuber of Gastrodia elata	15.78
	Mother_Juven	Mother tuber of Juvenile	25.26