Detail information of GWHGAAEX010263/evm.TU.scaffold_280.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-162 | FOG: PPR repeat |
| nr | gi|672143785|ref|XP_008795776.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Phoenix dactylifera] |
| Swissprot | tr|P0C8R0|PP416_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g43820 |
| trEMBL | tr|M0U194|M0U194_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P17870_001} |
| TAIR | AT5G43820 | 3.00E-162 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000273 | 231430 | 233103 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010263
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 202 | 227 | 0.06 |
| PF01535.19 | PPR | 268 | 297 | 0.0089 |
| PF01535.19 | PPR | 303 | 332 | 0.0013 |
| PF13041.5 | PPR_2 | 334 | 382 | 4.90E-10 |
| PF01535.19 | PPR | 444 | 471 | 0.79 |
| PF01535.19 | PPR | 479 | 507 | 0.34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.420 |
| SRR2545915 | Juvenile tuber | 5.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.290 |
| SRR5643514 | five period of Gastrodia elata | 3.640 | |
| SRR5643515 | five period of Gastrodia elata | 4.590 | |
| SRR5643524 | five period of Gastrodia elata | 7.520 | |
| SRR5643525 | five period of Gastrodia elata | 6.040 | |
| SRR5643528 | five period of Gastrodia elata | 4.190 | |
| SRR5643658 | five period of Gastrodia elata | 7.070 | |
| SRR5643659 | five period of Gastrodia elata | 4.220 | |
| SRR5643660 | five period of Gastrodia elata | 7.430 | |
| SRR5643661 | five period of Gastrodia elata | 4.680 | |
| SRR5643662 | five period of Gastrodia elata | 3.170 | |
| SRR5643663 | five period of Gastrodia elata | 5.390 | |
| SRR5643664 | five period of Gastrodia elata | 2.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.27 |
| Juven | Juvenile tuber | 9.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.59 | |
| Mother_Juven | Mother tuber of Juvenile | 8.37 |