Detail information of GWHGAAEX010265/evm.TU.scaffold_280.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1984 | 0 | Vesicle coat complex COPII, subunit SFB3 |
| nr | gi|672180174|ref|XP_008810270.1| | 0 | PREDICTED: protein transport protein Sec24-like At4g32640 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9M291|SC24C_ARATH | 0 | Protein transport protein Sec24-like CEF |
| trEMBL | tr|M0TY79|M0TY79_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07200_001} |
| TAIR | AT3G44340 | 0 | clone eighty-four |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000273 | 278176 | 348948 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010265
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 434 | 472 | 7.60E-16 |
| PF04811.14 | Sec23_trunk | 509 | 748 | 4.70E-75 |
| PF08033.11 | Sec23_BS | 754 | 837 | 4.80E-19 |
| PF04815.14 | Sec23_helical | 849 | 946 | 6.80E-21 |
| PF00626.21 | Gelsolin | 971 | 1026 | 4.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14007 | SEC24 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.570 |
| SRR2545915 | Juvenile tuber | 42.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.560 |
| SRR5643514 | five period of Gastrodia elata | 42.630 | |
| SRR5643515 | five period of Gastrodia elata | 41.370 | |
| SRR5643524 | five period of Gastrodia elata | 44.490 | |
| SRR5643525 | five period of Gastrodia elata | 35.740 | |
| SRR5643528 | five period of Gastrodia elata | 36.130 | |
| SRR5643658 | five period of Gastrodia elata | 34.530 | |
| SRR5643659 | five period of Gastrodia elata | 43.560 | |
| SRR5643660 | five period of Gastrodia elata | 46.040 | |
| SRR5643661 | five period of Gastrodia elata | 43.590 | |
| SRR5643662 | five period of Gastrodia elata | 42.950 | |
| SRR5643663 | five period of Gastrodia elata | 47.960 | |
| SRR5643664 | five period of Gastrodia elata | 42.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.44 |
| Juven | Juvenile tuber | 69.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.76 | |
| Mother_Juven | Mother tuber of Juvenile | 74.48 |