Gene detail

Detail information of GWHGAAEX010267/evm.TU.scaffold_280.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427737916\|ref\|YP_007057460.1\|	9.00E-07	hypothetical protein Riv7116_4492 [Rivularia sp. PCC 7116]
KOG	KOG3091	1.00E-11	Nuclear pore complex, p54 component (sc Nup57)
nr	gi\|672130653\|ref\|XP_008788864.1\|	2.32E-172	PREDICTED: uncharacterized protein LOC103706514 [Phoenix dactylifera]
Swissprot	tr\|Q8GYF7\|NUP54_ARATH	3.00E-12	Nuclear pore complex protein NUP54 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A067JSD8\|A0A067JSD8_JATCU	1.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:KDP26787.1}
TAIR	AT1G24310	1.00E-11	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000273	389923	406779	+

Transcript Sequence
>GWHTAAEX010267 AAAGAACTTTGCGTCATACGCAAAAATCCAAAACTTCGTCGACTTTCTTCTCGCTGTTCCACTGCTCCGAAGAGTTGCCATGGCTACAACCTAAGACCTAACCACGATCTAGAACCCTAAAAACCAAAGAAAAATGTTTGGAACACCTTCGTCGTCGCCAGTGTTTGGCACTCCCTCATCCGCTCCAGCCTTTGGGACTCCCTCATCTACTCCAGCCTTTGGCACTCCCTCATCTACTCCATTCGGAACTCCCTCATCTACTCCAGCATTTGGCACTCCTTCATCTACTCCAACATTCGGAACTCCCTCTTCTATCACTGCATTTGGCACCCCTACCTTGACTCCATCCTTCTCGACTCCGTCCACCGCGCCGGCGTTCGGCTCTGCGCCTATGTTCAGCTCCGCGTCGGCGTTTGGAACCCCATCATTTCCGGCATTTGGTTCTTCACCGTCTCCCTTCTTTCAACAACCCCAACCACTTCAACCTCTGCAGCCTCAGCCATCATTCTCCTTTTACCCTCAGCAACCGCAGCAGCAAACGCCGTCTTTCAACTTCCGATCGAATGCCCAGATTACCACGCAAATGGCTCCCGTTGCCCCGCTCACTCTCTACTTAACGGATCGTGACGTCCTGGCGATTGTGGATGCATACAAGGAGGACCCTGCCAACCCTAAATATTCATTCAGAAATTTGCTTTTTAGCGTGACTGATCCAACAGCAAGGGTGAAACCTGTTGGTGCTTCTGATATCATGTGGGCAGAAGCTATGGGAAAACTGGAAGGAATGGAAAACAGGGACCGGGAGAGATTATGGCCTGAACTCTTTCAAGGATTCAAAGGCCTCTCAAATAGAATCAAGATTCAGGACGAAACTATTGTTTCAGATGCTGAAAGGTTGCAGAAGACACAGTCCAACGTAAAGGAGCTTCAAAGGCATATTCAAGCAGATGTATTTCCTTGGGTTCAGAGATTGCATCAGGGAGAGCAGTGCCTTCAGAGGCGTATTTTGAGGGTTATGAGAATAGTGGAAGCGTTGGAGAGCAAAGGGCTTCGGATGCCCTTGATGAAAGATGAAGTTGAGCTGGCTGATAAGCTAGATTCCATTGTAAGACAGATTAAGTCAGGAGGAGACTTCTCCAGGAAGGTTCAGAATCTTCTGTCCATATCTCGCGTGCAAGTCAACAGCGGCGGCATCGGGGCCAGCTATCGTTTCGGTTCCGTCAAAATTGATGAGCAAAGCATTGCGGACTTGCAAGAGGTATTGCAGCAACAAACAGAGGCAATAGCGAGGCTCGGGAACGTGTTGAAAAAAAATGCGAGGGACCTCGAAATCATCACTGCTACTCATCACGTTGACAGCATGCAGCTGGACGATGGAAAGCCGAGGACGCCACCTCTCAGAACTTCTTAATTCCTTTCTTTCTTTTTTATTCCTTTTTTTTTTTTTTTTATGAATTTTTGTTGAGCAAAAAAATGTCTTTGGGGCGAATTATATATCTGCTAAAAATTATAAAAAAGCGGTGATAGAAATAGTTTGAAGATTTAGAAGCAGCGTATACGTATGGTTGTGTTTGCCGCCCTACAAATTATTCTCAGATAATATTTGACCCTTCCGAACGCCAAAGGACGCATTACAATAGTATATCAATAGATATATGATAGTACACTTATATTATTAAATGCA

Network for GWHGAAEX010267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13874.5	Nup54	199	343	2.90E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14308	NUP54, NUP57	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.120
SRP064423	SRR2545915	Juvenile tuber	10.430
SRP108465	SRR5643513	five period of Gastrodia elata	14.610
	SRR5643514	five period of Gastrodia elata	14.740
	SRR5643515	five period of Gastrodia elata	11.610
	SRR5643524	five period of Gastrodia elata	12.600
	SRR5643525	five period of Gastrodia elata	9.930
	SRR5643528	five period of Gastrodia elata	11.120
	SRR5643658	five period of Gastrodia elata	10.150
	SRR5643659	five period of Gastrodia elata	10.040
	SRR5643660	five period of Gastrodia elata	11.010
	SRR5643661	five period of Gastrodia elata	13.170
	SRR5643662	five period of Gastrodia elata	12.060
	SRR5643663	five period of Gastrodia elata	11.370
	SRR5643664	five period of Gastrodia elata	11.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.250
SRP279888	Gastro	Gastrodia elata tuber	12.13
	Juven	Juvenile tuber	16.03
	Mother_Gastro	Mother tuber of Gastrodia elata	20.06
	Mother_Juven	Mother tuber of Juvenile	14.25