Detail information of GWHGAAEX010273/evm.TU.scaffold_282.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743864881|ref|XP_010904690.1| | 0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q41558|HBP1C_WHEAT | 0 | Transcription factor HBP-1b(c1) (Fragment) |
| trEMBL | tr|M4WL65|M4WL65_9ASPA | 0 | Transcription factor TGA2 {ECO:0000313|EMBL:AGI17587.1} |
| TAIR | AT3G12250 | 4.00E-167 | TGACG motif-binding factor 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000274 | 3282 | 70324 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010273
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 145 | 186 | 1.60E-07 |
| PF14144.5 | DOG1 | 228 | 302 | 3.80E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.350 |
| SRR2545915 | Juvenile tuber | 51.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.550 |
| SRR5643514 | five period of Gastrodia elata | 25.830 | |
| SRR5643515 | five period of Gastrodia elata | 28.680 | |
| SRR5643524 | five period of Gastrodia elata | 25.860 | |
| SRR5643525 | five period of Gastrodia elata | 30.240 | |
| SRR5643528 | five period of Gastrodia elata | 25.900 | |
| SRR5643658 | five period of Gastrodia elata | 40.370 | |
| SRR5643659 | five period of Gastrodia elata | 30.110 | |
| SRR5643660 | five period of Gastrodia elata | 36.490 | |
| SRR5643661 | five period of Gastrodia elata | 29.070 | |
| SRR5643662 | five period of Gastrodia elata | 28.590 | |
| SRR5643663 | five period of Gastrodia elata | 29.000 | |
| SRR5643664 | five period of Gastrodia elata | 35.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 77.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 72.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 91.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 72.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.45 |
| Juven | Juvenile tuber | 46.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.65 | |
| Mother_Juven | Mother tuber of Juvenile | 67.12 |