Detail information of GWHGAAEX010275/evm.TU.scaffold_282.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|343085920|ref|YP_004775215.1|4.00E-19RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
KOGKOG06198.00E-119FOG: Leucine rich repeat
nrgi|255578680|ref|XP_002530200.1|2.68E-123serine-threonine protein kinase, plant-type, putative [Ricinus communis]
Swissprottr|Q94AG2|SERK1_ARATH7.00E-70Somatic embryogenesis receptor kinase 1 (Precursor)
trEMBLtr|B9SW31|B9SW31_RICCO1.00E-123Serine-threonine protein kinase, plant-type, putative {ECO:0000313|EMBL:EEF32190.1}
TAIRAT5G210908.00E-119Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000027493496112919+
Transcript Sequence

Network for GWHGAAEX010275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.11LRRNT_229681.10E-11
PF13855.5LRR_8961555.80E-09
PF00560.32LRR_11681990.58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms136.660
SRR2545915Juvenile tuber133.310
SRP108465SRR5643513five period of Gastrodia elata86.050
SRR5643514five period of Gastrodia elata84.730
SRR5643515five period of Gastrodia elata74.480
SRR5643524five period of Gastrodia elata75.820
SRR5643525five period of Gastrodia elata110.340
SRR5643528five period of Gastrodia elata94.690
SRR5643658five period of Gastrodia elata120.840
SRR5643659five period of Gastrodia elata105.870
SRR5643660five period of Gastrodia elata100.900
SRR5643661five period of Gastrodia elata101.130
SRR5643662five period of Gastrodia elata90.480
SRR5643663five period of Gastrodia elata97.890
SRR5643664five period of Gastrodia elata98.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_176.910
SRR6049655Rhizomagastrodiae_C368-T10_good_193.970
SRR6049656Rhizomagastrodiae_C368-T07_good_192.670
SRR6049657Rhizomagastrodiae_C368-T07_good_196.140
SRR6049658Rhizomagastrodiae_C368-T04_good_172.540
SRR6049659Rhizomagastrodiae_C368-T04_good_177.240
SRR6049660Rhizomagastrodiae_C368-T01_good_175.790
SRR6049661Rhizomagastrodiae_C368-T04_good_177.510
SRR6049662Rhizomagastrodiae_C368-T01_good_194.530
SRR6049663Rhizomagastrodiae_C368-T01_good_186.410
SRR6049664Rhizomagastrodiae_C368-T10_good_186.750
SRR6049665Rhizomagastrodiae_C368-T10_good_186.750
SRP279888GastroGastrodia elata tuber 107.18
JuvenJuvenile tuber124.99
Mother_GastroMother tuber of Gastrodia elata 69.34
Mother_JuvenMother tuber of Juvenile 63.12