Detail information of GWHGAAEX010297/evm.TU.scaffold_287.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302338833|ref|YP_003804039.1| | 9.00E-09 | RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293] |
| KOG | KOG0105 | 6.00E-94 | Alternative splicing factor ASF/SF2 (RRM superfamily) |
| nr | gi|672174317|ref|XP_008807318.1| | 3.70E-109 | PREDICTED: serine/arginine-rich splicing factor SR30-like [Phoenix dactylifera] |
| Swissprot | tr|O22315|SR34_ARATH | 5.00E-95 | Serine/arginine-rich-splicing factor SR34 |
| trEMBL | tr|B8LQY2|B8LQY2_PICSI | 1.00E-106 | Putative uncharacterized protein {ECO:0000313|EMBL:ABR18062.1} |
| TAIR | AT1G09140 | 6.00E-94 | SERINE-ARGININE PROTEIN 30 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000280 | 68302 | 82065 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010297
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 9 | 76 | 3.80E-18 |
| PF00076.21 | RRM_1 | 110 | 172 | 2.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12890 | SFRS1, ASF, SF2 | Spliceosome | map03040 |
| IL-17 signaling pathway | map04657 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.700 |
| SRR2545915 | Juvenile tuber | 68.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 94.420 |
| SRR5643514 | five period of Gastrodia elata | 70.270 | |
| SRR5643515 | five period of Gastrodia elata | 81.770 | |
| SRR5643524 | five period of Gastrodia elata | 82.840 | |
| SRR5643525 | five period of Gastrodia elata | 54.710 | |
| SRR5643528 | five period of Gastrodia elata | 56.440 | |
| SRR5643658 | five period of Gastrodia elata | 52.920 | |
| SRR5643659 | five period of Gastrodia elata | 103.110 | |
| SRR5643660 | five period of Gastrodia elata | 109.110 | |
| SRR5643661 | five period of Gastrodia elata | 107.020 | |
| SRR5643662 | five period of Gastrodia elata | 98.070 | |
| SRR5643663 | five period of Gastrodia elata | 95.160 | |
| SRR5643664 | five period of Gastrodia elata | 93.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 98.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 115.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 106.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 102.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 105.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 109.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 107.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 107.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 107.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 99.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 99.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 121.42 |
| Juven | Juvenile tuber | 151.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 100.54 | |
| Mother_Juven | Mother tuber of Juvenile | 177.90 |