Detail information of GWHGAAEX010301/evm.TU.scaffold_287.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|226941669|ref|YP_002796743.1|4.00E-36phenylalanyl-tRNA synthetase subunit alpha [Laribacter hongkongensis HLHK9]
KOGKOG27830Phenylalanyl-tRNA synthetase
nrgi|743768233|ref|XP_010914393.1|0PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|Q94K73|SYFM_ARATH0Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|M0TVW4|M0TVW4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P33620_001}
TAIRAT3G581400phenylalanyl-tRNA synthetase class IIc family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000280157352191490-
Transcript Sequence

Network for GWHGAAEX010301

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01409.19tRNA-synt_2d1263354.70E-44
PF03147.13FDX-ACB3484381.30E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01889FARSA, pheS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0043039Biological ProcesstRNA aminoacylation
GO:0006432Biological Processphenylalanyl-tRNA aminoacylation
GO:0000166Molecular Functionnucleotide binding
GO:0004826Molecular Functionphenylalanine-tRNA ligase activity
GO:0000049Molecular FunctiontRNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.390
SRR2545915Juvenile tuber6.510
SRP108465SRR5643513five period of Gastrodia elata9.150
SRR5643514five period of Gastrodia elata14.630
SRR5643515five period of Gastrodia elata8.360
SRR5643524five period of Gastrodia elata12.210
SRR5643525five period of Gastrodia elata4.950
SRR5643528five period of Gastrodia elata4.710
SRR5643658five period of Gastrodia elata3.600
SRR5643659five period of Gastrodia elata8.030
SRR5643660five period of Gastrodia elata9.060
SRR5643661five period of Gastrodia elata9.660
SRR5643662five period of Gastrodia elata8.550
SRR5643663five period of Gastrodia elata9.670
SRR5643664five period of Gastrodia elata8.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.330
SRR6049655Rhizomagastrodiae_C368-T10_good_113.020
SRR6049656Rhizomagastrodiae_C368-T07_good_110.260
SRR6049657Rhizomagastrodiae_C368-T07_good_17.150
SRR6049658Rhizomagastrodiae_C368-T04_good_15.980
SRR6049659Rhizomagastrodiae_C368-T04_good_14.840
SRR6049660Rhizomagastrodiae_C368-T01_good_16.690
SRR6049661Rhizomagastrodiae_C368-T04_good_14.880
SRR6049662Rhizomagastrodiae_C368-T01_good_114.680
SRR6049663Rhizomagastrodiae_C368-T01_good_19.350
SRR6049664Rhizomagastrodiae_C368-T10_good_116.010
SRR6049665Rhizomagastrodiae_C368-T10_good_116.010
SRP279888GastroGastrodia elata tuber 6.25
JuvenJuvenile tuber5.63
Mother_GastroMother tuber of Gastrodia elata 1.89
Mother_JuvenMother tuber of Juvenile 2.52