Detail information of GWHGAAEX010302/evm.TU.scaffold_287.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-136FOG: PPR repeat
nrgi|672174268|ref|XP_008807291.1|0PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q8VYR5|PP351_ARATH5.00E-143Pentatricopeptide repeat-containing protein At4g35850, mitochondrial (Precursor)
trEMBLtr|M0TN84|M0TN84_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P06810_001}
TAIRAT4G358503.00E-136Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000280210594265419+
Transcript Sequence

Network for GWHGAAEX010302

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17177.3PPR_long431543.60E-10
PF01535.19PPR2802970.35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.500
SRR2545915Juvenile tuber36.770
SRP108465SRR5643513five period of Gastrodia elata23.430
SRR5643514five period of Gastrodia elata22.600
SRR5643515five period of Gastrodia elata21.100
SRR5643524five period of Gastrodia elata22.630
SRR5643525five period of Gastrodia elata21.240
SRR5643528five period of Gastrodia elata21.340
SRR5643658five period of Gastrodia elata21.440
SRR5643659five period of Gastrodia elata25.450
SRR5643660five period of Gastrodia elata27.930
SRR5643661five period of Gastrodia elata24.680
SRR5643662five period of Gastrodia elata28.610
SRR5643663five period of Gastrodia elata32.850
SRR5643664five period of Gastrodia elata30.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.600
SRR6049655Rhizomagastrodiae_C368-T10_good_119.440
SRR6049656Rhizomagastrodiae_C368-T07_good_120.670
SRR6049657Rhizomagastrodiae_C368-T07_good_123.490
SRR6049658Rhizomagastrodiae_C368-T04_good_124.480
SRR6049659Rhizomagastrodiae_C368-T04_good_124.000
SRR6049660Rhizomagastrodiae_C368-T01_good_121.740
SRR6049661Rhizomagastrodiae_C368-T04_good_123.220
SRR6049662Rhizomagastrodiae_C368-T01_good_121.300
SRR6049663Rhizomagastrodiae_C368-T01_good_121.260
SRR6049664Rhizomagastrodiae_C368-T10_good_126.130
SRR6049665Rhizomagastrodiae_C368-T10_good_126.130
SRP279888GastroGastrodia elata tuber 32.95
JuvenJuvenile tuber33.60
Mother_GastroMother tuber of Gastrodia elata 31.58
Mother_JuvenMother tuber of Juvenile 34.71