Detail information of GWHGAAEX010303/evm.TU.scaffold_287.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-105 | FOG: PPR repeat |
| nr | gi|743806845|ref|XP_010927842.1| | 2.98E-143 | PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Elaeis guineensis] |
| Swissprot | tr|Q9C9I6|PP116_ARATH | 6.00E-106 | Pentatricopeptide repeat-containing protein At1g71490 |
| trEMBL | tr|W1NVP5|W1NVP5_AMBTC | 9.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ERM99667.1} |
| trEMBL | tr|W1NVP5|W1NVP5_AMBTC | 7.00E-24 | Uncharacterized protein {ECO:0000313|EMBL:ERM99667.1} |
| trEMBL | tr|W1NVP5|W1NVP5_AMBTC | 7.00E-15 | Uncharacterized protein {ECO:0000313|EMBL:ERM99667.1} |
| TAIR | AT1G71490 | 2.00E-105 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000280 | 280220 | 282257 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010303
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 146 | 188 | 1.40E-07 |
| PF13041.5 | PPR_2 | 243 | 289 | 1.30E-10 |
| PF01535.19 | PPR | 384 | 411 | 0.00017 |
| PF01535.19 | PPR | 457 | 479 | 0.032 |
| PF01535.19 | PPR | 485 | 514 | 0.34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.060 |
| SRR2545915 | Juvenile tuber | 1.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.510 |
| SRR5643514 | five period of Gastrodia elata | 2.300 | |
| SRR5643515 | five period of Gastrodia elata | 2.630 | |
| SRR5643524 | five period of Gastrodia elata | 1.540 | |
| SRR5643525 | five period of Gastrodia elata | 1.960 | |
| SRR5643528 | five period of Gastrodia elata | 1.560 | |
| SRR5643658 | five period of Gastrodia elata | 1.200 | |
| SRR5643659 | five period of Gastrodia elata | 3.540 | |
| SRR5643660 | five period of Gastrodia elata | 3.470 | |
| SRR5643661 | five period of Gastrodia elata | 3.050 | |
| SRR5643662 | five period of Gastrodia elata | 3.870 | |
| SRR5643663 | five period of Gastrodia elata | 2.500 | |
| SRR5643664 | five period of Gastrodia elata | 4.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.70 |
| Juven | Juvenile tuber | 1.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.81 |