Gene detail

Detail information of GWHGAAEX010305/evm.TU.scaffold_287.11

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	7.00E-148	FOG: PPR repeat
nr	gi\|743865315\|ref\|XP_010904799.1\|	0	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q9FMQ1\|PP376_ARATH	2.00E-148	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial (Precursor)
trEMBL	tr\|F6HKH1\|F6HKH1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55393.1}
trEMBL	tr\|F6HKH1\|F6HKH1_VITVI	2.00E-66	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55393.1}
trEMBL	tr\|F6HKH1\|F6HKH1_VITVI	2.00E-24	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55393.1}
trEMBL	tr\|F6HKH1\|F6HKH1_VITVI	2.00E-19	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55393.1}
trEMBL	tr\|F6HKH1\|F6HKH1_VITVI	9.00E-18	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55393.1}
TAIR	AT5G12100	7.00E-148	pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000280	356390	358513	+

Transcript Sequence
>GWHTAAEX010305 ATGAGCCGTTGTCTCAAGGTTTCACTTCAAAAGCCCGTCTTTGCACGGCTCACTCTGCTCCGGCTCGCCTGCGCGCTGCCAAGTGCTTCTGCCATGGCCGCCGTTCCTTCGGCCGACCGATCCGCCGCAGCCGAATTTCACCTGAGCCACATATCGAATCATCTCAGGTACGGATGGACGGAGGCAGCAGTAACGCTGGCCAAAACACTAATCTCTTCCCACCGCGATATCTTCCCATCTCCCATCCATCTCTATCAATCACTCTCAGCGCACTCGCCCGCATTTTCTTCCCAAGCTGCATCCCTCGTTGTTTCTGCTTGCGCGCAGCTCCGCCTCGGCGACGAAGCCCTTCGCCTCGTCTCTTTTCTGCCCTCCGATCACTTCCCTTATCTCCCCTCCTGCAAACATCTTTTGGAACTCTTGGTCTCTTGCCGTCGCTATTCCGATGTCCTGCTCTTCTTCTCCCAGATCAAGGGTTCCTGTGTCCGGATCGACATTTTCGTTTACAACAAGGCCATCGAGGCTACTGTGAAGCTGGGGGACGTGGACGCCGCGCTGCAGCTGATGAATTTGATGGAGCGGAACGACCTGATTCAGCCAAACGCTTTTACTTTCAATGTCTTGATCTCTGGGAAGTGGAAAGAGCGGAAGGCAGCCGACGCCCGAAAGCTCTTTGATGATATGCTGGAGAGGAAGCTTTCTCCGAATCTTGTTACCTACAACGCGATGATCGACGGTTATTGCAAGGTTGGGAATTTGGATGCAGTTTCGGGAGTTCTGGAACGCATGGTGGCCGGCCGTGTTGAGCCGAATCTGACTACTTTCAATTGTCTGCTTTGGGGATTTTGTCAAGCGGGAAGACTGGAAGAGGCCGAGGATTTGCTGAAGGAAATGAAAGGGAAAGGCCTTGCTCCTGATGGATTCACTTACAGCACACTTTTTACAGGGTACATGAATTCTGGGAATAAAAGGGCTTCTGTAGATCTGTTTGAAGAGTGTGTTAGAAAGGGCATACGACTTGAAGCTTATCCCTGCGGTGTTTTGCTCAGCGGGCTCTGCAAGGATGGGGACGTCTTTGAAGCAGTGGAGATATTGACAAAGACAGTGAACATGGGATTGGTGCCAACTATTGTAATGTACAATTGTATTGTTGATGGTTACTGCAGGATTGGGGATATTGAAGGGGCCTTCACAGCAGTGAGGAGAATGGAGTCATTGGGATTGAAGTCCAACCACATAACCTACAACTCACTGATTAAAGGAATGTGCAAATTAAAGAAGATGGAGGATGCAGAAAAGTTGCTAAAGGAGATGAGGGAGAAGGGTGAGGCTCCTACTGTTGAGACTATGAACACTTTAATCGATGCATATTCTCGAGACGGAAAATTCACAAGGTGTTTTGAGATCCTCGAGGAGATGGAAGAAAAAATGCTTCTGAAACCAAATGTTGTTTCTTATGGAGCTTTGATAAATGGGTTTTGCAAGATTGGAAAGCTTCATGAGGCTCATGCACTCTTTGCAGATACTTTGATCAGGGGCATCAAAGTCAATGAAATGATCTACAACATGCTTATTGATGCATATAGTGTTAATGGAAATTTTGAGATGGTTAACAAATTAATGCTTGAAATGAAGGAGGCTGGTTTTTGCCCAAACATTGTAACTTATAATTCTCTTATCAAAGGTCTCTGTAGAAAAGGATGTTTGTCTGATGCCGAAGAGATAATCAGTAAGTTGCAAAATGAGGGCATGCACCTTGACGTCGTCACTTACAACACATTGATGGCTGCATATTGTAATTATAATGATTTTCAAAAAGCTATTGAATTCTTCAATGAGATGGAAAAGCTTGGAATCAAACCCAATTTGGCAAGTTACTATATTTTGATCAGTAAATTGTGCGTGGATGGAAAAATGCAGGATGTTGATAATCTATATCAGCACTTATTACAGAAAAAAATGAATCCTGACAAGGGTCTGTATGGTGCTATGATATCCGGCTATGTTAGAATTGGAAATCATTCTAAGGTCCTTGCTCTACAGGAAGACATGAAGAAGTGTGGAATTGCACTTGGTGAGTTGATCTCTGTTTCTAATGAAGGGGCTGCTGAATTCCAAATATGA

Network for GWHGAAEX010305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	168	196	0.14
PF13041.5	PPR_2	200	249	1.60E-15
PF13041.5	PPR_2	270	318	1.20E-15
PF01535.19	PPR	347	370	0.041
PF13041.5	PPR_2	375	424	7.30E-13
PF13041.5	PPR_2	445	495	1.10E-12
PF13041.5	PPR_2	517	565	1.60E-13
PF13041.5	PPR_2	587	634	2.60E-16
PF01535.19	PPR	661	689	0.00017

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.230
SRP064423	SRR2545915	Juvenile tuber	8.760
SRP108465	SRR5643513	five period of Gastrodia elata	9.430
	SRR5643514	five period of Gastrodia elata	9.970
	SRR5643515	five period of Gastrodia elata	9.680
	SRR5643524	five period of Gastrodia elata	9.790
	SRR5643525	five period of Gastrodia elata	10.120
	SRR5643528	five period of Gastrodia elata	5.570
	SRR5643658	five period of Gastrodia elata	8.270
	SRR5643659	five period of Gastrodia elata	8.410
	SRR5643660	five period of Gastrodia elata	10.590
	SRR5643661	five period of Gastrodia elata	9.830
	SRR5643662	five period of Gastrodia elata	8.510
	SRR5643663	five period of Gastrodia elata	9.010
	SRR5643664	five period of Gastrodia elata	9.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.110
SRP279888	Gastro	Gastrodia elata tuber	13.64
	Juven	Juvenile tuber	18.90
	Mother_Gastro	Mother tuber of Gastrodia elata	9.49
	Mother_Juven	Mother tuber of Juvenile	20.23