Detail information of GWHGAAEX010307/evm.TU.scaffold_287.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0446 | 3.00E-77 | Vacuolar sorting protein VPS1, dynamin, and related proteins |
| nr | gi|743808036|ref|XP_010928240.1| | 1.00E-98 | PREDICTED: dynamin-2A-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SE83|DRP2A_ARATH | 8.00E-78 | Dynamin-2A |
| trEMBL | tr|M0SQG7|M0SQG7_MUSAM | 2.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P20040_001} |
| TAIR | AT1G10290 | 3.00E-77 | dynamin-like protein 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000280 | 364758 | 379174 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010307
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02212.17 | GED | 97 | 184 | 6.90E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01528 | DNM1_3 | Phospholipase D signaling pathway | map04072 |
| Endocytosis | map04144 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.520 |
| SRR2545915 | Juvenile tuber | 11.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.500 |
| SRR5643514 | five period of Gastrodia elata | 11.740 | |
| SRR5643515 | five period of Gastrodia elata | 7.830 | |
| SRR5643524 | five period of Gastrodia elata | 11.350 | |
| SRR5643525 | five period of Gastrodia elata | 16.770 | |
| SRR5643528 | five period of Gastrodia elata | 13.640 | |
| SRR5643658 | five period of Gastrodia elata | 16.850 | |
| SRR5643659 | five period of Gastrodia elata | 9.690 | |
| SRR5643660 | five period of Gastrodia elata | 10.720 | |
| SRR5643661 | five period of Gastrodia elata | 10.100 | |
| SRR5643662 | five period of Gastrodia elata | 9.950 | |
| SRR5643663 | five period of Gastrodia elata | 12.720 | |
| SRR5643664 | five period of Gastrodia elata | 10.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.68 |
| Juven | Juvenile tuber | 13.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.03 | |
| Mother_Juven | Mother tuber of Juvenile | 12.05 |