Detail information of GWHGAAEX010310/evm.TU.scaffold_29.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694900|ref|YP_008797954.1|4.00E-0826S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG28801.00E-79SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain
nrgi|672163918|ref|XP_008801821.1|3.05E-107PREDICTED: AMSH-like ubiquitin thioesterase 2 isoform X4 [Phoenix dactylifera]
Swissprottr|Q6NKP9|AMSH2_ARATH5.00E-85AMSH-like ubiquitin thioesterase 2
trEMBLtr|M0SWY4|M0SWY4_MUSAM4.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09050_001}
TAIRAT1G106001.00E-79associated molecule with the SH3 domain of STAM 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000031311002357971-
Transcript Sequence

Network for GWHGAAEX010310

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.20JAB841902.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11866STAMBP, AMSH Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.220
SRR2545915Juvenile tuber43.180
SRP108465SRR5643513five period of Gastrodia elata17.310
SRR5643514five period of Gastrodia elata19.190
SRR5643515five period of Gastrodia elata20.650
SRR5643524five period of Gastrodia elata18.220
SRR5643525five period of Gastrodia elata13.430
SRR5643528five period of Gastrodia elata24.690
SRR5643658five period of Gastrodia elata29.640
SRR5643659five period of Gastrodia elata25.520
SRR5643660five period of Gastrodia elata33.240
SRR5643661five period of Gastrodia elata29.660
SRR5643662five period of Gastrodia elata34.100
SRR5643663five period of Gastrodia elata30.280
SRR5643664five period of Gastrodia elata37.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.650
SRR6049655Rhizomagastrodiae_C368-T10_good_120.130
SRR6049656Rhizomagastrodiae_C368-T07_good_114.720
SRR6049657Rhizomagastrodiae_C368-T07_good_119.340
SRR6049658Rhizomagastrodiae_C368-T04_good_116.880
SRR6049659Rhizomagastrodiae_C368-T04_good_120.770
SRR6049660Rhizomagastrodiae_C368-T01_good_117.870
SRR6049661Rhizomagastrodiae_C368-T04_good_116.780
SRR6049662Rhizomagastrodiae_C368-T01_good_116.510
SRR6049663Rhizomagastrodiae_C368-T01_good_118.610
SRR6049664Rhizomagastrodiae_C368-T10_good_119.900
SRR6049665Rhizomagastrodiae_C368-T10_good_119.900
SRP279888GastroGastrodia elata tuber 40.01
JuvenJuvenile tuber24.37
Mother_GastroMother tuber of Gastrodia elata 34.26
Mother_JuvenMother tuber of Juvenile 26.20