Gene detail

Detail information of GWHGAAEX010311/evm.TU.scaffold_29.6

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672181509\|ref\|XP_008810976.1\|	8.48E-66	PREDICTED: double-stranded RNA-binding protein 1-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q6YW64\|DRB4_ORYSJ	4.00E-36	Double-stranded RNA-binding protein 4
trEMBL	tr\|D7TSR3\|D7TSR3_VITVI	2.00E-62	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33535.3}
TAIR	AT3G26932	3.00E-20	dsRNA-binding protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000031	437887	446583	-

Transcript Sequence
>GWHTAAEX010311 CGGCAATATTTAATTCTTCTCCTCTTCCTTCCGGTTTTGCCCCCAACTCATGATTTGTAAGCACAACCCTAGTTTTTCTTCTTTGCCTGACACTGCTTTCTCTCCCTTTGCCGCAGAGATGACAACACTTGTGGAGCCGCCGCCAACAGGTGCAGGTTCATCAGGGAACCCTATGTTTAAAAATAATTTGCAGCAGTATGCACAAAAATCAGGAGTACCACTTCCATCATATTCCACTATTAATGAAGGAGAACCTCATGCACCAAAATTTAGGGCAACTGTATTGGTAGATGGGATCAGATATACTTCTCCTAATACATTTTCTCATCGAAAAGAAGCAGAGCAAGATATTGCGAAATTTGCACTGGAGAGTATAATGGTGAAGTTTAAGAATGAGGGCTCCACCATTATTAACAAGGATCCAATATTCTGCAAATTGATCCTCTACGAGTATGGAAGTAAGTTGAAGATAGACAAACCAACTTACTCCACTGTTCGACAAGGAACTGATTCAATATTCGTAACAACTGTTACTTTTGATGCGAATACGTATTCTGGATATGCTGGAGTAACTAAAAAGGCAGCAGAACAGAATGCAGCCCGTGCCATTATTGATTCCATTTTAGCAAACTCAAGTACAAGTATATTAATGGCTCAAATTATAAAGACAAAGTGCAGACTATATTCAGCAGTAAGCAATAATGTCAATGCAGGGGTTGCAGCCATGAAATTTGAAATCGGGAGCGGAAGTGCAAGTCTACCTGCTGGATCAACAAGTTTGGCTCCTTGTATACAGAATAATCCGCTGAATTATCAGATCCCGGCTTCTGCTGATTTTATCCATCTTTTGGGAAAGAGAAAAAAATCAAAGAAGAGGAAGTCCGATCATGTTAAAAGACCAAAAGTTGAGGAACAGTAAGCAATGCATACCTGCGTCGCTTGAAGCCTATAATTCTGCTTTTATGACTATGCTCTCATGACCCTTTTTTGTCGCCAGTTTACATTTCATTAGATGCATTTTAGATAACTATTCATGGACTGATCATTTCTCAGCGTTATTTTGGTGCCCATTCTGCATTTCATTCTCTTACTAACTTATTGGACATATTGTGGGCTAATTTTTTTTTAAGTAAATTAAAAGCATCGTCATATATAGTATTCATTTTATTTAACTATATATTTAAATGTTCTATATTTGGGTCTGAGGATCACTTGTGATATCATCGAGGTCAATAAGAGATCAAGTCTTGTTGAGAATTCTTTTCCCTTTTGATGCTACAATTAGGCATCCATAAGAGAAGACCCTCCTTCAGGATGTTTCTATAATTACCTCTGATGTACATAAAGTGGCCAAAGGGACCAATCTGCAGGTTGCAGAGTTCTTAGACTCGGTGTGCTTGCGATTGAACTGAACCGCCTAAAGGCGGGAAAGAAAGACTAAACCGTTCAGCATAGGTGCAAGTTTTTGGAGCACTCAGCTTGATTTTTAATTATTTTGTTAATATGAGGTAATTTTTCTTACAAGTATTTGTTGAGATCAATAATATGAAGCAAATTTGGTCAACATACTTAATATGGCATTACATAATATGTGTTTATCATGTTAATATCTTAAGATATTTGCATGCAAAGCACTCAAAACATGCACATTTGGAAATATCCACTCACATCATACATTTTATATTTCACCATGATTTCATAATTAGGTGATAATACTGAAAATGGAAGTCAATGTGTTCTTAGTTTTGAAATATGCTTGTTTTGAATGCTTGTATGAAATTGCTCTAATTTCATATCATTATGCATGTTTTCTTACAATATTGTGTAATTCAGTTTCTTTTGAACTATTATAAACAGATACCATAAAATCCAAAACATGATGTGTTGACCTTTGATGGGGAATGTAAAACTGTGTCAATGATTTCATTGCAACTTTATTTTATGAATATTTTCTCTAGTCTTTTCACCTTAATATTTTGTTTTCTCCAAGACCATTCTTACAACATTGTGCTTGATATTCATAGTTATATAACGTGAAAGTATGACCCAAGCTGGTTGGATGAAATGGAGGAGCGTGCTTAGAGTTAGAAGCTATATGACCGGTTATATTTTATGAAGCTTAATGTTGGCCACCAAAGAAGAAACTTATCGACAGAATGAGCAAGATCTAAAAGTGGATAATGAGTGGGTATTCTCAAATGGATAGAGTGAGAACTTGGTACATTTGTAGCAAAGTTGAAGAGGTTCCAATAGTGG

Network for GWHGAAEX010311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00035.25	dsrm	44	107	2.40E-11
PF00035.25	dsrm	130	188	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.190
SRP064423	SRR2545915	Juvenile tuber	18.280
SRP108465	SRR5643513	five period of Gastrodia elata	10.020
	SRR5643514	five period of Gastrodia elata	9.480
	SRR5643515	five period of Gastrodia elata	10.980
	SRR5643524	five period of Gastrodia elata	11.130
	SRR5643525	five period of Gastrodia elata	3.950
	SRR5643528	five period of Gastrodia elata	2.500
	SRR5643658	five period of Gastrodia elata	5.120
	SRR5643659	five period of Gastrodia elata	8.860
	SRR5643660	five period of Gastrodia elata	7.600
	SRR5643661	five period of Gastrodia elata	8.600
	SRR5643662	five period of Gastrodia elata	4.920
	SRR5643663	five period of Gastrodia elata	5.660
	SRR5643664	five period of Gastrodia elata	4.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.400
SRP279888	Gastro	Gastrodia elata tuber	10.56
	Juven	Juvenile tuber	11.91
	Mother_Gastro	Mother tuber of Gastrodia elata	22.38
	Mother_Juven	Mother tuber of Juvenile	22.54