Detail information of GWHGAAEX010313/evm.TU.scaffold_29.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16012.00E-13GATA-4/5/6 transcription factors
nrgi|672162147|ref|XP_008800908.1|5.89E-19PREDICTED: GATA transcription factor 16-like [Phoenix dactylifera]
Swissprottr|Q9FJ10|GAT16_ARATH5.00E-14GATA transcription factor 16
trEMBLtr|A5BCR3|A5BCR3_VITVI9.00E-16Putative uncharacterized protein {ECO:0000313|EMBL:CAN74414.1}
TAIRAT5G493002.00E-13GATA transcription factor 16

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000031745252787568-
Transcript Sequence

Network for GWHGAAEX010313

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.26GATA2402759.30E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.180
SRP108465SRR5643513five period of Gastrodia elata0.170
SRR5643514five period of Gastrodia elata0.260
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.090
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.070
SRR5643660five period of Gastrodia elata0.150
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.060
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.300
SRR6049665Rhizomagastrodiae_C368-T10_good_10.300
SRP279888GastroGastrodia elata tuber 0.05
JuvenJuvenile tuber0.24
Mother_GastroMother tuber of Gastrodia elata 0.08
Mother_JuvenMother tuber of Juvenile 0.00