Detail information of GWHGAAEX010317/evm.TU.scaffold_29.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01674.00E-93FOG: Armadillo/beta-catenin-like repeats
nrgi|695066861|ref|XP_009380330.1|1.74E-133PREDICTED: U-box domain-containing protein 4-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q5XEZ8|PUB2_ARATH5.00E-32U-box domain-containing protein 2
trEMBLtr|M0RJU4|M0RJU4_MUSAM4.00E-134Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P20190_001}
TAIRAT3G034404.00E-93ARM repeat superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003113780271380496+
Transcript Sequence

Network for GWHGAAEX010317

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00514.22Arm1161549.90E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.440
SRR2545915Juvenile tuber13.320
SRP108465SRR5643513five period of Gastrodia elata21.310
SRR5643514five period of Gastrodia elata17.500
SRR5643515five period of Gastrodia elata11.770
SRR5643524five period of Gastrodia elata17.070
SRR5643525five period of Gastrodia elata58.470
SRR5643528five period of Gastrodia elata52.040
SRR5643658five period of Gastrodia elata124.740
SRR5643659five period of Gastrodia elata25.090
SRR5643660five period of Gastrodia elata22.020
SRR5643661five period of Gastrodia elata36.130
SRR5643662five period of Gastrodia elata24.390
SRR5643663five period of Gastrodia elata29.340
SRR5643664five period of Gastrodia elata11.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.820
SRR6049655Rhizomagastrodiae_C368-T10_good_112.790
SRR6049656Rhizomagastrodiae_C368-T07_good_111.950
SRR6049657Rhizomagastrodiae_C368-T07_good_115.630
SRR6049658Rhizomagastrodiae_C368-T04_good_117.800
SRR6049659Rhizomagastrodiae_C368-T04_good_112.360
SRR6049660Rhizomagastrodiae_C368-T01_good_110.180
SRR6049661Rhizomagastrodiae_C368-T04_good_113.350
SRR6049662Rhizomagastrodiae_C368-T01_good_115.250
SRR6049663Rhizomagastrodiae_C368-T01_good_18.490
SRR6049664Rhizomagastrodiae_C368-T10_good_114.110
SRR6049665Rhizomagastrodiae_C368-T10_good_114.110
SRP279888GastroGastrodia elata tuber 24.10
JuvenJuvenile tuber15.49
Mother_GastroMother tuber of Gastrodia elata 12.51
Mother_JuvenMother tuber of Juvenile 9.15