Detail information of GWHGAAEX010321/evm.TU.scaffold_29.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384154429|ref|YP_005537245.1| | 2.00E-143 | amino acid transporter [Amycolatopsis mediterranei S699] |
| KOG | KOG1289 | 0 | Amino acid transporters |
| nr | gi|743758020|ref|XP_010924660.1| | 0 | PREDICTED: amino-acid permease BAT1 homolog isoform X1 [Elaeis guineensis] |
| Swissprot | tr|B9EXZ6|BAT1_ORYSJ | 0 | Amino-acid permease BAT1 homolog |
| trEMBL | tr|A0A067KT42|A0A067KT42_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP35014.1} |
| TAIR | AT2G01170 | 0 | bidirectional amino acid transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000031 | 1864815 | 1877185 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010321
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 30 | 486 | 7.80E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006865 | Biological Process | amino acid transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.560 |
| SRR2545915 | Juvenile tuber | 7.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.560 |
| SRR5643514 | five period of Gastrodia elata | 5.500 | |
| SRR5643515 | five period of Gastrodia elata | 4.970 | |
| SRR5643524 | five period of Gastrodia elata | 5.530 | |
| SRR5643525 | five period of Gastrodia elata | 8.950 | |
| SRR5643528 | five period of Gastrodia elata | 14.230 | |
| SRR5643658 | five period of Gastrodia elata | 9.850 | |
| SRR5643659 | five period of Gastrodia elata | 3.220 | |
| SRR5643660 | five period of Gastrodia elata | 4.580 | |
| SRR5643661 | five period of Gastrodia elata | 4.260 | |
| SRR5643662 | five period of Gastrodia elata | 3.800 | |
| SRR5643663 | five period of Gastrodia elata | 5.620 | |
| SRR5643664 | five period of Gastrodia elata | 3.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.70 |
| Juven | Juvenile tuber | 6.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.17 | |
| Mother_Juven | Mother tuber of Juvenile | 9.87 |