Detail information of GWHGAAEX010334/evm.TU.scaffold_29.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 6.00E-86 | MADS box transcription factor |
| nr | gi|672163977|ref|XP_008801852.1| | 5.39E-112 | PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|Q38694|AGL9_ARADE | 7.00E-111 | Agamous-like MADS-box protein AGL9 homolog |
| trEMBL | tr|W8EAT5|W8EAT5_9ASPA | 2.00E-111 | SEPALLATA3 {ECO:0000313|EMBL:AHJ80843.1} |
| TAIR | AT1G24260 | 6.00E-86 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000031 | 3928131 | 3939871 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010334
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 5.50E-26 |
| PF01486.16 | K-box | 86 | 171 | 2.50E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.470 |
| SRR2545915 | Juvenile tuber | 8.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.590 |
| SRR5643514 | five period of Gastrodia elata | 8.080 | |
| SRR5643515 | five period of Gastrodia elata | 8.600 | |
| SRR5643524 | five period of Gastrodia elata | 7.830 | |
| SRR5643525 | five period of Gastrodia elata | 38.220 | |
| SRR5643528 | five period of Gastrodia elata | 32.620 | |
| SRR5643658 | five period of Gastrodia elata | 35.470 | |
| SRR5643659 | five period of Gastrodia elata | 11.170 | |
| SRR5643660 | five period of Gastrodia elata | 11.820 | |
| SRR5643661 | five period of Gastrodia elata | 9.910 | |
| SRR5643662 | five period of Gastrodia elata | 8.590 | |
| SRR5643663 | five period of Gastrodia elata | 9.650 | |
| SRR5643664 | five period of Gastrodia elata | 7.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.73 |
| Juven | Juvenile tuber | 10.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.80 | |
| Mother_Juven | Mother tuber of Juvenile | 10.94 |