Detail information of GWHGAAEX010339/evm.TU.scaffold_29.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|326315275|ref|YP_004232947.1| | 1.00E-13 | Kelch repeat type 1-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] |
| KOG | KOG1230 | 0 | Protein containing repeated kelch motifs |
| nr | gi|743814380|ref|XP_010930020.1| | 0 | PREDICTED: kelch domain-containing protein 4 [Elaeis guineensis] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 3.00E-19 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|Q0JC97|Q0JC97_ORYSJ | 0 | Os04g0483600 protein {ECO:0000313|EMBL:BAF15040.1} |
| TAIR | AT5G50310 | 0 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000031 | 4569697 | 4675216 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010339
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13418.5 | Kelch_4 | 68 | 123 | 6.10E-07 |
| PF13415.5 | Kelch_3 | 135 | 187 | 1.20E-08 |
| PF13415.5 | Kelch_3 | 190 | 243 | 1.40E-05 |
| PF13415.5 | Kelch_3 | 246 | 304 | 3.80E-05 |
| PF13422.5 | DUF4110 | 576 | 651 | 1.60E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.310 |
| SRR2545915 | Juvenile tuber | 11.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.490 |
| SRR5643514 | five period of Gastrodia elata | 13.190 | |
| SRR5643515 | five period of Gastrodia elata | 10.690 | |
| SRR5643524 | five period of Gastrodia elata | 11.440 | |
| SRR5643525 | five period of Gastrodia elata | 8.480 | |
| SRR5643528 | five period of Gastrodia elata | 5.790 | |
| SRR5643658 | five period of Gastrodia elata | 9.350 | |
| SRR5643659 | five period of Gastrodia elata | 9.440 | |
| SRR5643660 | five period of Gastrodia elata | 10.070 | |
| SRR5643661 | five period of Gastrodia elata | 8.710 | |
| SRR5643662 | five period of Gastrodia elata | 8.960 | |
| SRR5643663 | five period of Gastrodia elata | 9.590 | |
| SRR5643664 | five period of Gastrodia elata | 10.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.75 |
| Juven | Juvenile tuber | 11.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.56 | |
| Mother_Juven | Mother tuber of Juvenile | 8.62 |