Gene detail

Detail information of GWHGAAEX010360/evm.TU.scaffold_29.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433653951\|ref\|YP_007297659.1\|	4.00E-75	DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
KOG	KOG0383	0	Predicted helicase
nr	gi\|743857458\|ref\|XP_010942119.1\|	0	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9S775\|PKL_ARATH	0	CHD3-type chromatin-remodeling factor PICKLE
trEMBL	tr\|B9RNX6\|B9RNX6_RICCO	0	Chromodomain helicase DNA binding protein, putative {ECO:0000313\|EMBL:EEF46894.1}
TAIR	AT2G25170	0	chromatin remodeling factor CHD3 (PICKLE)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000031	6594004	6721332	-

Transcript Sequence
>GWHTAAEX010360 GACTTCTTCTAGTTTGTATATTCGACTGTCGCAGTGCTTCAATTAAGAAGCCCTGTAACGGGTAGATATCTCCTTTCCCTGTCCTGAGGTTTAGGGGGGAACGGGACAAGTGTGCTCGGAAGAGTTTCGCAGCCAGCGGGCTAATCGTTCGTCGATATCTCTGTCGAGCCAACTAATACTGTTCTGATTTATCCATTCCACTCAGTCCCACTATCTGTTCCCCGGAGCTCGCTAGGGCGTAATTGGAGATGAGCAGCTTGGTTGAAAGGCTTCGAATTCGATCCGATAAGAGGCCTCTTTACAGTGACGGGGGATCAGAAGATGATGATTTTATTCCTTCGAAGAAAAGACCTGGGACTAGGCCCGAGGATAAGCCTGCAGAACGGATAGTTAGAAAAGATGCGAAAGACGATGCGTGCCAAGAATGTGGTAAAAGTGGAAGCCTTCTTTGGTGTAAAACTTGCACGTATTCTTTCCATCAAAAGTGTTTGATTTACCCTGGGAAAGTTTCAGATGCAGATAACTGGAGCTGTCCTGTTTGTGTAAACCCTCTCAGTGAGATTGATAAGATTCTAGACTGTGAAACACGTACAACTGCAACAGATGATACTGATGTTTCACATTCTGGGTCCAAAAAGACTGATTTTAAACATTATCTAGTGAAGTGGAAGGGATTGTCATATCTTCATTGTACATGGGTTCCTGAGGAGGAGTTTAAAAAATCTTGCAAAGTCAATCCTCGATTGAAGACCCGTTTAAATTATTTTCAAAAACAAATGGATGCAATGGGTGACACCAGCGATGATTGGATTGCAATTCGCCCTGAATGGACAACAGTTGACAGAATTATTGCAACACGAAAAACTGGGGATGAACGTGAATATTATGTTAAATGGAGAGAGCTTCCCTATGATGAGTGCTCATGGGAAGTTAAATCAGATATTTCTATTTTTCAACCTCAGATTGAAAGGTTTAATATGATCCAGTCCAGAGGTAGCAAGAAACCTCTTCGCAAGAACAAAAATCTTCATCAAGATTCAAAGGATTCTAAGAAAGAGTTGCGACAGTCTGAGGGAAAAAGTGAGCTTCCGCATTTTGAGAAAAAGAAAGAGTTTCAGCAGTTTGAGAAAACCCCCAAATTTCTTTCTGGCGGGAAATTGCATCCTTATCAACTTGAAGGTTTAAAATTCCTTCACTATTCGTGGTCAAAAGGCACTCATGTGATTTTAGCAGATGAGATGGGTCTCGGAAAAACTATACAGAGCATTGCTTTTCTTGCTTCTCTTTTTGAAGATAAAATTTATCCTCATTTAGTGGTAGCCCCACTTTCTACACTGCGGAACTGGGAGCGTGAATTTTTAACCTGGGCTCCACAAATGAATGTTGTAATGTACTTTGGATCAGCTCAAGCCCGTACTTTCATAAGGAATTATGAATTTTTCTTAGCTAAAGCGATAACCAAAAAACATAAAAAGAAAAAATCTTTTAAAGATAACATGCCAATGAAGCAAGAAAAAAGAATAAAGTTTGATGTTCTTTTGACATCTTATGAAATGATCAATATGGATGCAGCATCCCTGAAATCTATTAATTGGAAGTGTATGATTGTAGATGAAGGTCATCGCCTCAAGAACAAAGAGTCCAAATTGTTTCTTCAATTGAAACTTTTTAATTCAAAGCATCGGGTGCTTCTAACAGGAACACCTCTTCAGAATAACTTGGACGAGCTTTTCATGCTGATGCATTTTCTGGATGATGGAAAGTTTCCAAGTATTGAAGATTTTCAGCAGGAATTCAAAGACATCAATCAAGAGGAGCAAATTGCTAGGCTTCACAAACTGCTTGCACCACATCTCCTTCGAAGAATTAAGAAGGATGTGATGAAGGACTTGCCGCCAAAAAAAGAACTTATTTTACGAGTGGATTTATGTGGTAAACAGAAGGAATATTACAAAGCTATCCTAACTCGAAATTACCAGACTCTTACTCGTCGTGGTGGCGCCCAGATATCCCTTATTAATGTTGTAATGGAACTTCGCAAACTCTGTTGTCATGTTTACATGCTAGATGGTGTGGAGCCTGAAGCACAGCTGTCAAATGCTGATGGTCTAAAGGAACTTTTGGATTCTTCTGGGAAGATGCAGTTGCTAGATAAGATGATGATGAAGCTTAAAGAACAAGGGCACAGAGTTCTCATATATTCACAGTTTCAGCATATGCTAGATTTGTTGGAGGACTATTTGAGTTACATGAAATGGAGCTATGAGAGGATTGATGGAAGAATTGGTGGAGCAGAAAGGCAGATTCGCATAGACCGATTCAATGCCAAAAATTCTACTCGATTTTGCTTTCTTCTCTCTACCAGAGCTGGTGGGCTGGGCATTAATCTTGCCACTGCAGATACTGTTATAATCTATGATAGTGACTGGAATCCTCATGCTGATTTGCAAGCAATGGCTAGAGCACATCGCTTGGGGCAAACTAATAAGGTAATGATATACCGGCTTATAACTCGAGGAACCATTGAGGAAAGGATGATGCAGATGACAAAGAAAAAGATGATTTTAGAGCATCTTGTTGTTGGTCGGCTCAAGACCCAAACAGTTAATCAAGAAGAGTTGGATGATATCATAAGATATGGGTCAAAAGAGCTTTTTGCTGATGAGAGTGAAGGACCAGGAAAAGCTCGCCAGATTCACTATGATGATAGTGCAATTGACAGGTTATTAAATCGTGATGAAATTGGCATTGATGAGGCTTCAGTTGATGATGAAGATGATGACTTGCTAAAAGCCTTCAAGGTTGCAAACTTTGAATACATAGATGAAGTTGAAGCTGCTGCTGCAAGAGCTGAAGAAGCTAAGAAGAAGTCAGAGGCTGAAAATGTTCTTACTTCCAATAATGATAAAGCCAGTTACTGGGAGGAATTACTTAAGGACAAATATGAAGTCATCCAGATTGAAGAGTCTATTAATATGGGCAAGGGAAAGCGGAATCGCAAACAGTTGGCTGCTACTGAAGAGGGTGAACAAGCTGAAACGATCTCGGTCTCTGAGGATGAGGATTATTCTCTTGAAGAAGATTTGTCAGATACTGACAGTGGTCAACCAGCACAATTGTCAGGGAGAAAGAACCAACTCTCAAGAAAAAGATCTCGCGTTGATTTAACTGAACCACATGCACTAATGGAAGGTGAAGGAAGGTCTTTAAGAGTTCGTGGTTTTAATCAAAACCAACGGGCAGGATTCTTACAAATACTTATGAGGTTTGGTTTTGGAAAATATGATTGGAAAGAGTTTGTGCCTCGGTTGAAGGGAAAAAGCTTACAGGAAGTTTATGAATATGGTCGTCTGTTTATGGAGCATCTTACTGAGGAGTTAAATGACTTATCCACTTTTTCAGATGGAGTACCAAAAGAAGGTGTACGTGTAGATGAAGTGCTGGTAAGACTTGGGATCCTTCAAACCATAGAAGAAAAGTTGAACTTTATTACAGAAAATCCCGGTGCTCCTCTTTTTGCAGAAGACATTCAATCATGGTTTTCTGGCTTGAAAGGAAGAATATGGAAGGAAGAACATGATATTTTTTTGTTGAGAGCTATCCTAAAGCATGGCTATGCTAGATGGCAATCCATAGTTGAGGATAAAGATATCGGGCTTTCTGAGGTTGTTCGTCAAGAGCTGAACCTTCCTGTACTAAATGGACCATTTGGTGGCACAGGGAGCCAAACATTTGACAATGCAAACATTGCTTCAGCTGATGGATCTTCAGAATCTTTGAAGGCAAACCAATCTGTCCCAGATTATACTTTGCTTTATCAATTTAGGGAAGTACAGAGAAGGATAGTGGACTTTGTAAGGAAAAGATATCACCTTTTGGATAGAGCTATTAACGCTGAGCTGCTGAAAGAAACAAATGGAGGAGTCAGGCCTTCTGATCTTACTAGGGAGTCTGACATTGGCATTAAGACTGCTGAAAGTGTAGAAACAGAACCAACGGATCGGAGCTTGTTATTTAAAGAATTGCCTATGATGGAACCCATTGCTCTACCAGATCCTGCTTGCGGCGGTAGCAGCAGCGGCCATCACGAGATGGTCCGGCTCTATAATGGAATGTGCCAATTAGTAGAAGCAAGCGCTCCTGATGCTCTTGATTCTCATCATGGTAACAGCTCCGCAGCTACTTCCAGATTTATAAAAAGTCTACAACAGCTTGAGATGATGTGCGAAGATGTGTGTCGGGCCCTTGCCACAAAAGAAGGATCAGACGCTTCGGAAGATGCCAAAAGTGTTCCTTCTGATGCGATGAATGGCGAGCCTGTGCAAGCGGGGAATGAAGGTGATGCGAAGGTTGGGGATGCACCGTCGGAGGGTGTGGTTATCTTAGAAGATTAAAAATATTGGGATTAATTGATTAAAAATAGGTATTTAGTGATAGTGTTCTAATATAGCAGCAGCAGCAGATGCATTTTTCATCATTAGCTTTTCTATATGTTCTTGTTGCTTATCTTTTTCTTATCCTCAAAAGTTGTAAATGAAAGGCCCAAATGGAAATTAATGTCTTAAACCACCTTGACATGAGGCTCTTTATCATTGTTAGATGATGACGCTTATGAGACATGATGATTTTGATCATTTCTATTACAATAATAATTATTTGATTGATCCAA

Network for GWHGAAEX010360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00385.23	Chromo	104	158	2.40E-10
PF00385.23	Chromo	196	243	1.80E-14
PF00176.22	SNF2_N	326	605	4.40E-63
PF00271.30	Helicase_C	630	743	6.20E-18
PF06465.12	DUF1087	867	925	1.80E-17
PF06461.10	DUF1086	962	1092	5.50E-46
PF08074.10	CHDCT2	1105	1135	8.10E-07

Protein Sequence

>GWHPAAEX010360
MSSLVERLRIRSDKRPLYSDGGSEDDDFIPSKKRPGTRPEDKPAERIVRKDAKDDACQECGKSGSLLWCKTCTYSFHQKCLIYPGKVSDADNWSCPVCVNPLSEIDKILDCETRTTATDDTDVSHSGSKKTDFKHYLVKWKGLSYLHCTWVPEEEFKKSCKVNPRLKTRLNYFQKQMDAMGDTSDDWIAIRPEWTTVDRIIATRKTGDEREYYVKWRELPYDECSWEVKSDISIFQPQIERFNMIQSRGSKKPLRKNKNLHQDSKDSKKELRQSEGKSELPHFEKKKEFQQFEKTPKFLSGGKLHPYQLEGLKFLHYSWSKGTHVILADEMGLGKTIQSIAFLASLFEDKIYPHLVVAPLSTLRNWEREFLTWAPQMNVVMYFGSAQARTFIRNYEFFLAKAITKKHKKKKSFKDNMPMKQEKRIKFDVLLTSYEMINMDAASLKSINWKCMIVDEGHRLKNKESKLFLQLKLFNSKHRVLLTGTPLQNNLDELFMLMHFLDDGKFPSIEDFQQEFKDINQEEQIARLHKLLAPHLLRRIKKDVMKDLPPKKELILRVDLCGKQKEYYKAILTRNYQTLTRRGGAQISLINVVMELRKLCCHVYMLDGVEPEAQLSNADGLKELLDSSGKMQLLDKMMMKLKEQGHRVLIYSQFQHMLDLLEDYLSYMKWSYERIDGRIGGAERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMMQMTKKKMILEHLVVGRLKTQTVNQEELDDIIRYGSKELFADESEGPGKARQIHYDDSAIDRLLNRDEIGIDEASVDDEDDDLLKAFKVANFEYIDEVEAAAARAEEAKKKSEAENVLTSNNDKASYWEELLKDKYEVIQIEESINMGKGKRNRKQLAATEEGEQAETISVSEDEDYSLEEDLSDTDSGQPAQLSGRKNQLSRKRSRVDLTEPHALMEGEGRSLRVRGFNQNQRAGFLQILMRFGFGKYDWKEFVPRLKGKSLQEVYEYGRLFMEHLTEELNDLSTFSDGVPKEGVRVDEVLVRLGILQTIEEKLNFITENPGAPLFAEDIQSWFSGLKGRIWKEEHDIFLLRAILKHGYARWQSIVEDKDIGLSEVVRQELNLPVLNGPFGGTGSQTFDNANIASADGSSESLKANQSVPDYTLLYQFREVQRRIVDFVRKRYHLLDRAINAELLKETNGGVRPSDLTRESDIGIKTAESVETEPTDRSLLFKELPMMEPIALPDPACGGSSSGHHEMVRLYNGMCQLVEASAPDALDSHHGNSSAATSRFIKSLQQLEMMCEDVCRALATKEGSDASEDAKSVPSDAMNGEPVQAGNEGDAKVGDAPSEGVVILED

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	103.250
SRP064423	SRR2545915	Juvenile tuber	90.160
SRP108465	SRR5643513	five period of Gastrodia elata	26.690
	SRR5643514	five period of Gastrodia elata	19.860
	SRR5643515	five period of Gastrodia elata	20.840
	SRR5643524	five period of Gastrodia elata	19.620
	SRR5643525	five period of Gastrodia elata	22.590
	SRR5643528	five period of Gastrodia elata	20.160
	SRR5643658	five period of Gastrodia elata	20.900
	SRR5643659	five period of Gastrodia elata	39.020
	SRR5643660	five period of Gastrodia elata	41.680
	SRR5643661	five period of Gastrodia elata	36.130
	SRR5643662	five period of Gastrodia elata	40.770
	SRR5643663	five period of Gastrodia elata	39.470
	SRR5643664	five period of Gastrodia elata	49.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.520
SRP279888	Gastro	Gastrodia elata tuber	48.28
	Juven	Juvenile tuber	52.54
	Mother_Gastro	Mother tuber of Gastrodia elata	19.37
	Mother_Juven	Mother tuber of Juvenile	34.87