Detail information of GWHGAAEX010361/evm.TU.scaffold_290.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|134096391|ref|YP_001101466.1|1.00E-63cold-shock DeaD box ATP-dependent RNA helicase (partial match) [Herminiimonas arsenicoxydans]
KOGKOG03450ATP-dependent RNA helicase
nrgi|672175934|ref|XP_008808033.1|0PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Phoenix dactylifera]
Swissprottr|Q761Z9|RH18_ORYSJ0DEAD-box ATP-dependent RNA helicase 18
trEMBLtr|B9HHV1|B9HHV1_POPTR0DEAD/DEAH box helicase family protein {ECO:0000313|EMBL:EEE89549.1}
TAIRAT5G054500P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000003381821842882+
Transcript Sequence

Network for GWHGAAEX010361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD422168.50E-41
PF00271.30Helicase_C2663781.90E-23
PF13959.5DUF42174214773.70E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.890
SRR2545915Juvenile tuber28.890
SRP108465SRR5643513five period of Gastrodia elata26.910
SRR5643514five period of Gastrodia elata24.080
SRR5643515five period of Gastrodia elata25.500
SRR5643524five period of Gastrodia elata24.190
SRR5643525five period of Gastrodia elata35.220
SRR5643528five period of Gastrodia elata39.790
SRR5643658five period of Gastrodia elata34.890
SRR5643659five period of Gastrodia elata28.470
SRR5643660five period of Gastrodia elata32.040
SRR5643661five period of Gastrodia elata32.750
SRR5643662five period of Gastrodia elata33.310
SRR5643663five period of Gastrodia elata29.950
SRR5643664five period of Gastrodia elata33.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.600
SRR6049655Rhizomagastrodiae_C368-T10_good_121.490
SRR6049656Rhizomagastrodiae_C368-T07_good_126.330
SRR6049657Rhizomagastrodiae_C368-T07_good_134.720
SRR6049658Rhizomagastrodiae_C368-T04_good_132.570
SRR6049659Rhizomagastrodiae_C368-T04_good_137.820
SRR6049660Rhizomagastrodiae_C368-T01_good_132.310
SRR6049661Rhizomagastrodiae_C368-T04_good_131.420
SRR6049662Rhizomagastrodiae_C368-T01_good_122.470
SRR6049663Rhizomagastrodiae_C368-T01_good_125.110
SRR6049664Rhizomagastrodiae_C368-T10_good_125.470
SRR6049665Rhizomagastrodiae_C368-T10_good_125.470
SRP279888GastroGastrodia elata tuber 43.31
JuvenJuvenile tuber44.08
Mother_GastroMother tuber of Gastrodia elata 29.65
Mother_JuvenMother tuber of Juvenile 39.20