Detail information of GWHGAAEX010383/evm.TU.scaffold_290.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13750Beta tubulin
nrgi|566253473|ref|XP_006387232.1|0hypothetical protein POPTR_1455s00200g [Populus trichocarpa]
Swissprottr|P45960|TBB4_ORYSJ0Tubulin beta-4 chain
trEMBLtr|U7DZ59|U7DZ59_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP46146.1}
TAIRAT5G122500beta-6 tubulin

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000338297074298964+
Transcript Sequence

Network for GWHGAAEX010383

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.24Tubulin32112.60E-69
PF03953.16Tubulin_C2613818.40E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0005874Cellular Componentmicrotubule

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.410
SRR2545915Juvenile tuber111.520
SRP108465SRR5643513five period of Gastrodia elata247.630
SRR5643514five period of Gastrodia elata199.500
SRR5643515five period of Gastrodia elata194.150
SRR5643524five period of Gastrodia elata194.370
SRR5643525five period of Gastrodia elata82.980
SRR5643528five period of Gastrodia elata100.780
SRR5643658five period of Gastrodia elata74.550
SRR5643659five period of Gastrodia elata227.520
SRR5643660five period of Gastrodia elata241.560
SRR5643661five period of Gastrodia elata269.930
SRR5643662five period of Gastrodia elata193.800
SRR5643663five period of Gastrodia elata191.340
SRR5643664five period of Gastrodia elata121.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1325.580
SRR6049655Rhizomagastrodiae_C368-T10_good_1318.390
SRR6049656Rhizomagastrodiae_C368-T07_good_1390.260
SRR6049657Rhizomagastrodiae_C368-T07_good_1242.470
SRR6049658Rhizomagastrodiae_C368-T04_good_1234.870
SRR6049659Rhizomagastrodiae_C368-T04_good_1212.410
SRR6049660Rhizomagastrodiae_C368-T01_good_1209.540
SRR6049661Rhizomagastrodiae_C368-T04_good_1219.350
SRR6049662Rhizomagastrodiae_C368-T01_good_1353.670
SRR6049663Rhizomagastrodiae_C368-T01_good_1299.560
SRR6049664Rhizomagastrodiae_C368-T10_good_1507.280
SRR6049665Rhizomagastrodiae_C368-T10_good_1507.280
SRP279888GastroGastrodia elata tuber 220.17
JuvenJuvenile tuber293.36
Mother_GastroMother tuber of Gastrodia elata 186.84
Mother_JuvenMother tuber of Juvenile 182.31