Gene detail

Detail information of GWHGAAEX010384/evm.TU.scaffold_290.23

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743785894\|ref\|XP_010922033.1\|	2.27E-160	PREDICTED: uncharacterized protein LOC105045454 [Elaeis guineensis]
trEMBL	tr\|V4U125\|V4U125_9ROSI	6.00E-152	Uncharacterized protein {ECO:0000313\|EMBL:ESR59592.1}
TAIR	AT2G26770	3.00E-140	plectin-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000338	305284	314646	-

Transcript Sequence
>GWHTAAEX010384 ATGCAGAGGGAGGCGGCAAATTCAGTTTCATTCGCGGCTAATACCTCAGCTGCGCTTCCTAAGCATTCTATTGGGCTTTATAAGAATGCAGCTAGCTCGAATCACGGACGTGCTATTTGGGCTAGGGGTGCTTATGTCGAATCCAGGGAAAAAGACCTAAAACTTCATTCACATGGAGCGATTGCAGCGGAGGAGACTGGCCGGAAGCTCGAGCAACAGCAGGGACACTATGTTCGTGCCATGGTAAAGAGATATGAGGGAGGTTTGGAGATGTCAGCCAGGTTCTCCAATCAGGCAATTGCGCATGATAATGCTTTCATCGAGCCTAAGGATGAGGTTCCCAATTTGCTTTCTTTTAAGGAGATTGTTGCCAAGGGGTCTGCCCAAATGCTTGAGCAGAAGAAGAGATTTGTGGTTCGAGACCTGACGAAGAAATTTGAGAAAGTCTTAGAATCATCCACAGAGTTATGTGATCAGACTCAAGTAGCTGAAATAGTGTCAATTGATATTTTTATTCATTTGAAGAAACTATGGGATATATTGTTAAAGCTAAGAAAACATGTGGTGGGCGAAAACAAAGATGATGTGGATGAGTCTATCTCTATGGTTGAAACTCTAGCTGGCGAACTCTCCCAAACTGATGGAAGGGTTATTTATCAAAAGGACAAGGTGACAAATCAAGCAAAAACCCTAAAAAAGGCTGCTGAAGAAGCTAAGAAAGTGGTTGATGAGCAAACAAATTTTATAATAGCACAAGTTGACAATACTAGGGCAACAATGCAAAGAATTGTGGAAGATGTTGATGAAAGAGAAAAAATAATTGAAAATGAGATGAATCAGAAATTAAAAGAGCTTATGAGTGAAGTTCAAGAGGCTCGACGTATCACTATGCTTCATCAACCTAGCAGGGTAAAAGATATGGAGAGTGAACTTCAAGCATTGCGCATTAAACTCGAAGAAAAATCAAATTGTTGTATTAATCTTCACAAAAAGTTGGAATTGATCCAAAAGGTTGAGCATAATAAAACTAGTTTATTTAAGTTGGAGGGGCTTGAATGCTTGGGCTCACATTTGCAGATCATTTCTCGAATGGAAAATACTTCCAGCATTTTACATAATTCTGTTCAATGGTATCGCATACAACTCGAAGATGGGAATAAAGAGCTGATTGCAGGTGCAACAAAACTTGTGTATGCCCCAGAACCATTTGATGTTGGATGTTTCTTGCAAGCGGAGATTACTACGAATAAAGAGAGAGTGGATCTTAGAACAACTGGTCCTATAAAATTAGCTGTTGAACTTGAAAACTATGTGGAGGATCTTGTGCAAGAGCCAGAAACTAAATTCAATGTTGTTATTCTCCAAATTAATGGGATTGATCATTCTTCAAACTCTATCTATTCATTCCATGTTGGTAAGCGAAGGCTAAAACTTTCAAAAGGTTGGAAAACAAAAGCCAAGGAGTTCTATTCTTTGTCAACGCAGGTTTGTGGTGTTAGCCATGGTGGTGGAGCTACAGCTCAATCAATAATTTGGCAAACTAAAAATAATCTCTCCTTCACTTTAGGATTTGAATCCACGAGAGATAGGAATGCAGCAATAATGCTAGCAAGAAGATTTGCTTCTGACTGTAATGCTTCAAGCTTCCTCCAAACAAACAATGAATAATTTTCAGATTGTGCTGGCTGGATCAAACGGCAGCATACCAAAATTAAACAGTATTCCGCTGCAAGTATGGTAAATTCTGCTCTCTTTAATGCTTATGATTTTAGGGATAATTTCATACATACCACTTAAATCTTTTTGCATATTTAACACCTAATTATTTCATCTTTCACAAAATTAGTTTCTATTTTCTTGTTATTAACTAAAATAACTTCCCATTTAGTGCCTCTCAGTTATTTTAAATCAAAGAGATTCTATGATTAGGTGTTAATTTTGTAA

Network for GWHGAAEX010384

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module9

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16711.4	SCAB-ABD	120	158	1.70E-09
PF16712.4	SCAB_CC	167	332	5.40E-45
PF16709.4	SCAB-IgPH	346	546	1.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003779	Molecular Function	actin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.820
SRP064423	SRR2545915	Juvenile tuber	2.180
SRP108465	SRR5643513	five period of Gastrodia elata	0.040
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.080
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	2.850
	SRR5643528	five period of Gastrodia elata	1.150
	SRR5643658	five period of Gastrodia elata	1.610
	SRR5643659	five period of Gastrodia elata	1.000
	SRR5643660	five period of Gastrodia elata	1.770
	SRR5643661	five period of Gastrodia elata	1.590
	SRR5643662	five period of Gastrodia elata	0.470
	SRR5643663	five period of Gastrodia elata	1.050
	SRR5643664	five period of Gastrodia elata	0.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.890
SRP279888	Gastro	Gastrodia elata tuber	5.43
	Juven	Juvenile tuber	0.51
	Mother_Gastro	Mother tuber of Gastrodia elata	2.53
	Mother_Juven	Mother tuber of Juvenile	0.81