Detail information of GWHGAAEX010385/evm.TU.scaffold_2904.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29059.00E-42Transcription initiation factor IIF, small subunit (RAP30)
nrgi|695080827|ref|XP_009387899.1|4.39E-49PREDICTED: transcription initiation factor IIF subunit beta-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RNB0|M0RNB0_MUSAM3.00E-49Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00790_001}
TAIRAT1G755109.00E-42Transcription initiation factor IIF, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000289610501387+
Transcript Sequence

Network for GWHGAAEX010385

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02270.14TFIIF_beta9806.60E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03139TFIIF2, GTF2F2, TFG2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms234.190
SRR2545915Juvenile tuber317.510
SRP108465SRR5643513five period of Gastrodia elata332.530
SRR5643514five period of Gastrodia elata420.650
SRR5643515five period of Gastrodia elata254.580
SRR5643524five period of Gastrodia elata254.630
SRR5643525five period of Gastrodia elata1045.080
SRR5643528five period of Gastrodia elata525.790
SRR5643658five period of Gastrodia elata560.150
SRR5643659five period of Gastrodia elata283.880
SRR5643660five period of Gastrodia elata448.250
SRR5643661five period of Gastrodia elata372.810
SRR5643662five period of Gastrodia elata529.180
SRR5643663five period of Gastrodia elata396.770
SRR5643664five period of Gastrodia elata485.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1341.610
SRR6049655Rhizomagastrodiae_C368-T10_good_11653.490
SRR6049656Rhizomagastrodiae_C368-T07_good_1325.110
SRR6049657Rhizomagastrodiae_C368-T07_good_1475.210
SRR6049658Rhizomagastrodiae_C368-T04_good_1224.370
SRR6049659Rhizomagastrodiae_C368-T04_good_1229.810
SRR6049660Rhizomagastrodiae_C368-T01_good_1265.140
SRR6049661Rhizomagastrodiae_C368-T04_good_1249.860
SRR6049662Rhizomagastrodiae_C368-T01_good_1221.270
SRR6049663Rhizomagastrodiae_C368-T01_good_1207.190
SRR6049664Rhizomagastrodiae_C368-T10_good_1348.650
SRR6049665Rhizomagastrodiae_C368-T10_good_1348.650
SRP279888GastroGastrodia elata tuber 799.99
JuvenJuvenile tuber1,989.10
Mother_GastroMother tuber of Gastrodia elata 1,197.25
Mother_JuvenMother tuber of Juvenile 1,562.54