Detail information of GWHGAAEX010392/evm.TU.scaffold_291.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296133478|ref|YP_003640725.1| | 7.00E-25 | serine/threonine protein kinase [Thermincola potens JR] |
| nr | gi|590629309|ref|XP_007026953.1| | 0 | Receptor lectin kinase [Theobroma cacao] |
| Swissprot | tr|Q9M345|LRK42_ARATH | 0 | L-type lectin-domain containing receptor kinase IV.2 (Precursor) |
| trEMBL | tr|A0A061EQW9|A0A061EQW9_THECC | 0 | Receptor lectin kinase {ECO:0000313|EMBL:EOY07455.1} |
| TAIR | AT3G53810 | 0 | Concanavalin A-like lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000290 | 165534 | 168203 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010392
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00139.18 | Lectin_legB | 43 | 291 | 2.20E-72 |
| PF00069.24 | Pkinase | 369 | 636 | 2.10E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.890 |
| SRR2545915 | Juvenile tuber | 4.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.210 |
| SRR5643514 | five period of Gastrodia elata | 8.000 | |
| SRR5643515 | five period of Gastrodia elata | 6.780 | |
| SRR5643524 | five period of Gastrodia elata | 7.230 | |
| SRR5643525 | five period of Gastrodia elata | 9.970 | |
| SRR5643528 | five period of Gastrodia elata | 9.920 | |
| SRR5643658 | five period of Gastrodia elata | 9.180 | |
| SRR5643659 | five period of Gastrodia elata | 8.960 | |
| SRR5643660 | five period of Gastrodia elata | 13.430 | |
| SRR5643661 | five period of Gastrodia elata | 11.740 | |
| SRR5643662 | five period of Gastrodia elata | 13.260 | |
| SRR5643663 | five period of Gastrodia elata | 11.840 | |
| SRR5643664 | five period of Gastrodia elata | 13.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.05 |
| Juven | Juvenile tuber | 6.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.00 | |
| Mother_Juven | Mother tuber of Juvenile | 5.40 |