Gene detail

Detail information of GWHGAAEX010396/evm.TU.scaffold_292.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|295695138\|ref\|YP_003588376.1\|	3.00E-49	major facilitator superfamily protein [Kyrpidia tusciae DSM 2912]
KOG	KOG2532	0	Permease of the major facilitator superfamily
nr	gi\|743810533\|ref\|XP_010928923.1\|	0	PREDICTED: probable anion transporter 3, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8W0H5\|PHT43_ORYSJ	0	Probable anion transporter 3, chloroplastic (Precursor)
trEMBL	tr\|M5WS68\|M5WS68_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09675.1}
TAIR	AT3G46980	0	phosphate transporter 4;3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000288	80132	123060	+

Transcript Sequence
>GWHTAAEX010396 ATGTCGTCTGCTGTGAGCTCTCTCCTGCACTTAATAGATGGAGTTGTTCCTCTTCCCTTACCTCCGGTCTCTCGAAATCCCACTCTCCGAGGCACCAAAAGATCCATCTCGAGCAATGGACTTGCTCCTCGATTCTCTCAGATCTCCTTCCTGCCAACATGTTATCGAGCCCCGCTTCAATGCGCATTTCACCGAGCAAATCAGTTTCAGGTTCGAGGAGAAGTTCATCGGGGCATTACGCGGCGCGGCGCTTCTGATTCGCTCTTTCCCGAGGAAGAGTTGCAGAGCCCGACCATTCTGGAATTTGTCACCTCTGAAAGGGTCAAGGTTGTGGCGATGCTTGGGTTGGCTTTGGCCCTCTGTAACGCCGATCGGGTAGTAATGTCCGTGGCAATCGTACCACTGTCCAAGGCTCGTGGATGGAGCCAATCATTTTCTGGAATTGTTCAGTCATCTTTCTTGTGGGGATACTTGATGTCGCCCATAATTGGTGGGGTTTTTGTGGATTGTTATGGTGGTAAAGTGGTCATGGCATGGGGTGTGACTCTTTGGTCTATTGCAACATTTCTTACGCCTTGGGCAGCAGAGACTTCTTTATTAGCGTTACTGACAATGAGAGTTCTTCTAGGAATAGCTGAAGGAGTTGCTCTTCCCAGTATGAACAACATGATCTCTAGATGGTTTCCTCAAACAGAGCGGTCAAGAGCTGTTGGAATTGTAATGGCTGGATTCCAACTTGGGAGTGCCATTGGACTCTTAATTTCCCCTATAATTATGTCAAAGGCTGGAATTTTTGGGCCTTTTGTGATATTTGGACTATTTGGGTTTCTCTGGGTGCTGGTATGGCTACCTGGAACAACAAGTTCTCCTGAAAAACATCCTCAAATATCAAAATATGAGTTGGAGTACATCACTAAAAGTCATAGGCCTCTGATTCACACAGAAAGCTATGGAAAGTCTAGAATGATACCTCCTTTGGTGAAATTGCTTTCTAGACTCCCGACTTGGGCTTTAATTTCTGCAAATGCAATGCACAGCTGGGGATACTTTGTCATTCTCTCATGGATGCCTATTTACTTCAACATAATTCATCACGTTGACCTTCGGCAAGCTGCATGGTTCAGTGCACTCCCATGGTTCATGATGGCTGTTCTAGGTTATGTTGCTGGTGCTGTATCAGACATGCTGATTAGGAGAGGTGTTAGCATTACTTCCACACGTAAAATTATGCAGACAATAGGTTTTGTTGGCCCTGCCATTTCTCTTATTGGTTTAAATGCTTCAAAGAATCCTTGTGTGGCGTCTACTTGGCTTACAGCAGCTGTTGGATTGAGCTCTTTCAGTCATTCTGGCTTTCTTGTAAATTTCCAGGAAGTTGCTCCAAAATATGCAGGTGTCCTCCATGGGATTTCTAATACCGCTGGAACATTGGCTGCTATTATGGGAACAGTGGGTGCTGGTTTCTTCGTTCAGAAGATGGGTTCATTCCATGGATTTATTGTGCTCACTTCACTTCTCTACTTGTTTTGTGCGCTCTTCTGGAATGCCTTTGCCACAGGAGATCCTGTCCAGTTCGATAAAGCTTGA

Network for GWHGAAEX010396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.15	MFS_1	116	482	3.90E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005887	Cellular Component	integral component of plasma membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.200
SRP064423	SRR2545915	Juvenile tuber	8.480
SRP108465	SRR5643513	five period of Gastrodia elata	4.000
	SRR5643514	five period of Gastrodia elata	4.250
	SRR5643515	five period of Gastrodia elata	3.490
	SRR5643524	five period of Gastrodia elata	3.960
	SRR5643525	five period of Gastrodia elata	4.660
	SRR5643528	five period of Gastrodia elata	3.880
	SRR5643658	five period of Gastrodia elata	4.990
	SRR5643659	five period of Gastrodia elata	4.490
	SRR5643660	five period of Gastrodia elata	4.520
	SRR5643661	five period of Gastrodia elata	5.770
	SRR5643662	five period of Gastrodia elata	5.390
	SRR5643663	five period of Gastrodia elata	5.670
	SRR5643664	five period of Gastrodia elata	4.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.020
SRP279888	Gastro	Gastrodia elata tuber	4.93
	Juven	Juvenile tuber	5.78
	Mother_Gastro	Mother tuber of Gastrodia elata	3.72
	Mother_Juven	Mother tuber of Juvenile	5.29