Detail information of GWHGAAEX010401/evm.TU.scaffold_293.3
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
COG | gi|310817801|ref|YP_003950159.1| | 3.00E-11 | urease [Stigmatella aurantiaca DW4/3-1] |
nr | gi|743814670|ref|XP_010930125.1| | 1.20E-14 | PREDICTED: urease isoform X3 [Elaeis guineensis] |
Swissprot | tr|B9GCH9|UREA_ORYSJ | 1.00E-16 | Urease |
trEMBL | tr|B9A9C8|B9A9C8_MORAL | 1.00E-14 | Urease {ECO:0000256|PIRNR:PIRNR001222} |
TAIR | AT1G67550 | 2.00E-15 | urease |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000285 | 36181 | 39441 | + |
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Transcript Sequence | |||
Network for GWHGAAEX010401
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF00547.17 | Urease_gamma | 1 | 42 | 2.10E-13 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
K01427 | URE | Metabolic pathways | map01100 |
Microbial metabolism in diverse environments | map01120 | ||
Purine metabolism | map00230 | ||
Arginine biosynthesis | map00220 | ||
Atrazine degradation | map00791 |
Gene Ontology
GO term | Ontology | Name |
---|---|---|
GO:0043419 | Biological Process | urea catabolic process |
GO:0016151 | Molecular Function | nickel cation binding |
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
SRR2545915 | Juvenile tuber | 0.190 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
SRR5643514 | five period of Gastrodia elata | 0.420 | |
SRR5643515 | five period of Gastrodia elata | 0.350 | |
SRR5643524 | five period of Gastrodia elata | 0.000 | |
SRR5643525 | five period of Gastrodia elata | 0.000 | |
SRR5643528 | five period of Gastrodia elata | 0.190 | |
SRR5643658 | five period of Gastrodia elata | 0.000 | |
SRR5643659 | five period of Gastrodia elata | 0.000 | |
SRR5643660 | five period of Gastrodia elata | 0.170 | |
SRR5643661 | five period of Gastrodia elata | 0.000 | |
SRR5643662 | five period of Gastrodia elata | 0.170 | |
SRR5643663 | five period of Gastrodia elata | 0.000 | |
SRR5643664 | five period of Gastrodia elata | 0.000 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
SRP279888 | Gastro | Gastrodia elata tuber | 0.61 |
Juven | Juvenile tuber | 1.87 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 1.38 | |
Mother_Juven | Mother tuber of Juvenile | 1.31 |