Detail information of GWHGAAEX010403/evm.TU.scaffold_293.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158338215|ref|YP_001519392.1| | 4.00E-22 | urease subunit alpha [Acaryochloris marina MBIC11017] |
| nr | gi|743814666|ref|XP_010930124.1| | 1.01E-29 | PREDICTED: urease isoform X2 [Elaeis guineensis] |
| Swissprot | tr|B9GCH9|UREA_ORYSJ | 2.00E-27 | Urease |
| trEMBL | tr|W5FUG6|W5FUG6_WHEAT | 2.00E-30 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_5DL_6D9882F3A.1} |
| TAIR | AT1G67550 | 6.00E-26 | urease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000285 | 92790 | 93316 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010403
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01427 | URE | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Arginine biosynthesis | map00220 | ||
| Atrazine degradation | map00791 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0009039 | Molecular Function | urease activity |
| GO:0016151 | Molecular Function | nickel cation binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.490 |
| SRR2545915 | Juvenile tuber | 3.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.470 |
| SRR5643514 | five period of Gastrodia elata | 28.910 | |
| SRR5643515 | five period of Gastrodia elata | 55.550 | |
| SRR5643524 | five period of Gastrodia elata | 19.860 | |
| SRR5643525 | five period of Gastrodia elata | 140.340 | |
| SRR5643528 | five period of Gastrodia elata | 35.290 | |
| SRR5643658 | five period of Gastrodia elata | 64.890 | |
| SRR5643659 | five period of Gastrodia elata | 35.800 | |
| SRR5643660 | five period of Gastrodia elata | 78.580 | |
| SRR5643661 | five period of Gastrodia elata | 52.910 | |
| SRR5643662 | five period of Gastrodia elata | 70.170 | |
| SRR5643663 | five period of Gastrodia elata | 40.970 | |
| SRR5643664 | five period of Gastrodia elata | 53.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 145.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 71.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 89.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 143.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 139.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 113.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 107.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 88.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 111.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 132.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 251.34 |
| Juven | Juvenile tuber | 257.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 239.88 | |
| Mother_Juven | Mother tuber of Juvenile | 132.44 |