Detail information of GWHGAAEX010404/evm.TU.scaffold_293.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383459637|ref|YP_005373626.1| | 3.00E-39 | bifunctional urease subunit gamma/beta [Corallococcus coralloides DSM 2259] |
| nr | gi|698528254|ref|XP_009760957.1| | 9.99E-56 | PREDICTED: urease-like isoform X3 [Nicotiana sylvestris] |
| Swissprot | tr|E0ZS48|UREA_ORYSI | 3.00E-55 | Urease |
| trEMBL | tr|A0A067GQS1|A0A067GQS1_CITSI | 1.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:KDO81979.1} |
| TAIR | AT1G67550 | 5.00E-53 | urease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000285 | 105881 | 135253 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010404
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00547.17 | Urease_gamma | 20 | 104 | 1.50E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01427 | URE | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Arginine biosynthesis | map00220 | ||
| Atrazine degradation | map00791 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043419 | Biological Process | urea catabolic process |
| GO:0016151 | Molecular Function | nickel cation binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.770 |
| SRR2545915 | Juvenile tuber | 10.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.120 |
| SRR5643514 | five period of Gastrodia elata | 1.100 | |
| SRR5643515 | five period of Gastrodia elata | 1.480 | |
| SRR5643524 | five period of Gastrodia elata | 1.530 | |
| SRR5643525 | five period of Gastrodia elata | 1.480 | |
| SRR5643528 | five period of Gastrodia elata | 1.350 | |
| SRR5643658 | five period of Gastrodia elata | 1.320 | |
| SRR5643659 | five period of Gastrodia elata | 0.970 | |
| SRR5643660 | five period of Gastrodia elata | 1.650 | |
| SRR5643661 | five period of Gastrodia elata | 1.320 | |
| SRR5643662 | five period of Gastrodia elata | 1.900 | |
| SRR5643663 | five period of Gastrodia elata | 1.540 | |
| SRR5643664 | five period of Gastrodia elata | 1.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.37 |
| Juven | Juvenile tuber | 2.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.15 | |
| Mother_Juven | Mother tuber of Juvenile | 2.51 |