Detail information of GWHGAAEX010413/evm.TU.scaffold_295.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434390988|ref|YP_007125935.1| | 0 | Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428] |
| KOG | KOG1186 | 0 | Copper amine oxidase |
| nr | gi|743876728|ref|XP_010907652.1| | 0 | PREDICTED: copper amine oxidase 1 [Elaeis guineensis] |
| Swissprot | tr|Q8H1H9|AMO_ARATH | 1.00E-66 | Primary amine oxidase (Precursor) |
| trEMBL | tr|A0A061EEA6|A0A061EEA6_THECC | 0 | Copper amine oxidase family protein isoform 1 {ECO:0000313|EMBL:EOY00609.1} |
| TAIR | AT2G42490 | 0 | Copper amine oxidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000287 | 35837 | 99017 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010413
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02727.15 | Cu_amine_oxidN2 | 81 | 170 | 0.0002 |
| PF02728.15 | Cu_amine_oxidN3 | 206 | 309 | 8.50E-30 |
| PF01179.19 | Cu_amine_oxid | 335 | 748 | 9.70E-149 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009308 | Biological Process | amine metabolic process |
| GO:0048038 | Molecular Function | quinone binding |
| GO:0008131 | Molecular Function | primary amine oxidase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 94.320 |
| SRR2545915 | Juvenile tuber | 54.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.910 |
| SRR5643514 | five period of Gastrodia elata | 70.640 | |
| SRR5643515 | five period of Gastrodia elata | 53.140 | |
| SRR5643524 | five period of Gastrodia elata | 68.620 | |
| SRR5643525 | five period of Gastrodia elata | 50.250 | |
| SRR5643528 | five period of Gastrodia elata | 75.860 | |
| SRR5643658 | five period of Gastrodia elata | 52.940 | |
| SRR5643659 | five period of Gastrodia elata | 34.080 | |
| SRR5643660 | five period of Gastrodia elata | 31.140 | |
| SRR5643661 | five period of Gastrodia elata | 33.540 | |
| SRR5643662 | five period of Gastrodia elata | 28.170 | |
| SRR5643663 | five period of Gastrodia elata | 37.650 | |
| SRR5643664 | five period of Gastrodia elata | 30.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 73.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.90 |
| Juven | Juvenile tuber | 22.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.37 | |
| Mother_Juven | Mother tuber of Juvenile | 19.65 |