Detail information of GWHGAAEX010414/evm.TU.scaffold_295.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19471.00E-61Leucine rich repeat proteins, some proteins contain F-box
nrgi|743813915|ref|XP_010929869.1|1.48E-162PREDICTED: uncharacterized protein LOC105051233 [Elaeis guineensis]
trEMBLtr|J3N7R4|J3N7R4_ORYBR9.00E-147Uncharacterized protein {ECO:0000313|EnsemblPlants:OB11G18500.1}
TAIRAT5G404701.00E-61RNI-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000287100340103331-
Transcript Sequence

Network for GWHGAAEX010414

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box32654.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.210
SRR2545915Juvenile tuber10.230
SRP108465SRR5643513five period of Gastrodia elata12.430
SRR5643514five period of Gastrodia elata10.130
SRR5643515five period of Gastrodia elata8.680
SRR5643524five period of Gastrodia elata8.250
SRR5643525five period of Gastrodia elata13.900
SRR5643528five period of Gastrodia elata14.230
SRR5643658five period of Gastrodia elata20.500
SRR5643659five period of Gastrodia elata9.040
SRR5643660five period of Gastrodia elata10.120
SRR5643661five period of Gastrodia elata12.550
SRR5643662five period of Gastrodia elata10.760
SRR5643663five period of Gastrodia elata9.480
SRR5643664five period of Gastrodia elata13.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.060
SRR6049655Rhizomagastrodiae_C368-T10_good_118.530
SRR6049656Rhizomagastrodiae_C368-T07_good_110.210
SRR6049657Rhizomagastrodiae_C368-T07_good_114.860
SRR6049658Rhizomagastrodiae_C368-T04_good_126.040
SRR6049659Rhizomagastrodiae_C368-T04_good_133.660
SRR6049660Rhizomagastrodiae_C368-T01_good_113.280
SRR6049661Rhizomagastrodiae_C368-T04_good_126.880
SRR6049662Rhizomagastrodiae_C368-T01_good_18.770
SRR6049663Rhizomagastrodiae_C368-T01_good_19.620
SRR6049664Rhizomagastrodiae_C368-T10_good_18.550
SRR6049665Rhizomagastrodiae_C368-T10_good_18.550
SRP279888GastroGastrodia elata tuber 9.05
JuvenJuvenile tuber10.04
Mother_GastroMother tuber of Gastrodia elata 36.60
Mother_JuvenMother tuber of Juvenile 12.64