Detail information of GWHGAAEX010415/evm.TU.scaffold_295.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383453134|ref|YP_005367123.1| | 5.00E-19 | serine/threonine protein kinase [Corallococcus coralloides DSM 2259] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|743887677|ref|XP_010910436.1| | 0 | PREDICTED: receptor like protein kinase S.2 [Elaeis guineensis] |
| Swissprot | tr|O48837|LRKS2_ARATH | 0 | Receptor like protein kinase S.2 |
| trEMBL | tr|A2XQ61|A2XQ61_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAY92971.1} |
| TAIR | AT2G32800 | 0 | protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000287 | 142621 | 144996 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010415
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 103 | 325 | 1.00E-39 |
| PF07714.16 | Pkinase_Tyr | 483 | 748 | 4.20E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.980 |
| SRR2545915 | Juvenile tuber | 2.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.630 |
| SRR5643514 | five period of Gastrodia elata | 5.550 | |
| SRR5643515 | five period of Gastrodia elata | 4.760 | |
| SRR5643524 | five period of Gastrodia elata | 6.460 | |
| SRR5643525 | five period of Gastrodia elata | 4.840 | |
| SRR5643528 | five period of Gastrodia elata | 5.280 | |
| SRR5643658 | five period of Gastrodia elata | 6.120 | |
| SRR5643659 | five period of Gastrodia elata | 9.940 | |
| SRR5643660 | five period of Gastrodia elata | 13.430 | |
| SRR5643661 | five period of Gastrodia elata | 17.300 | |
| SRR5643662 | five period of Gastrodia elata | 11.520 | |
| SRR5643663 | five period of Gastrodia elata | 15.230 | |
| SRR5643664 | five period of Gastrodia elata | 14.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.38 |
| Juven | Juvenile tuber | 3.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.62 | |
| Mother_Juven | Mother tuber of Juvenile | 3.17 |