Detail information of GWHGAAEX010420/evm.TU.scaffold_295.10_evm.TU.scaffold_295.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-180 | FOG: PPR repeat |
| nr | gi|743813868|ref|XP_010929850.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FKC3|PP424_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g48730, chloroplastic (Precursor) |
| trEMBL | tr|M0S024|M0S024_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P15160_001} |
| TAIR | AT5G48730 | 2.00E-180 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000287 | 276019 | 289478 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010420
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 160 | 185 | 0.23 |
| PF13041.5 | PPR_2 | 189 | 234 | 3.20E-10 |
| PF12854.6 | PPR_1 | 255 | 278 | 2.20E-06 |
| PF13041.5 | PPR_2 | 329 | 377 | 4.80E-10 |
| PF13812.5 | PPR_3 | 423 | 481 | 8.50E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.110 |
| SRR2545915 | Juvenile tuber | 3.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.410 |
| SRR5643514 | five period of Gastrodia elata | 1.890 | |
| SRR5643515 | five period of Gastrodia elata | 1.590 | |
| SRR5643524 | five period of Gastrodia elata | 1.550 | |
| SRR5643525 | five period of Gastrodia elata | 1.440 | |
| SRR5643528 | five period of Gastrodia elata | 1.010 | |
| SRR5643658 | five period of Gastrodia elata | 0.980 | |
| SRR5643659 | five period of Gastrodia elata | 1.670 | |
| SRR5643660 | five period of Gastrodia elata | 2.330 | |
| SRR5643661 | five period of Gastrodia elata | 1.430 | |
| SRR5643662 | five period of Gastrodia elata | 1.660 | |
| SRR5643663 | five period of Gastrodia elata | 1.390 | |
| SRR5643664 | five period of Gastrodia elata | 1.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.76 |
| Juven | Juvenile tuber | 2.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.73 | |
| Mother_Juven | Mother tuber of Juvenile | 0.79 |