Gene detail

Detail information of GWHGAAEX010423/evm.TU.scaffold_296.3

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0703	3.00E-122	Predicted GTPase-activating protein
nr	gi\|743761846\|ref\|XP_010905130.1\|	1.71E-163	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Elaeis guineensis]
Swissprot	tr\|Q9FL69\|AGD5_ARATH	7.00E-123	Probable ADP-ribosylation factor GTPase-activating protein AGD5
trEMBL	tr\|I1GTF9\|I1GTF9_BRADI	1.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G24680.1}
TAIR	AT5G54310	3.00E-122	ARF-GAP domain 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000291	89004	128488	+

Transcript Sequence
>GWHTAAEX010423 ATTTTTTTGGTTCGTTGTTTTTCCGGCATTTCTCATGTATAAAATTCTACTGTAAAATAGAAAAGTCAAGGCCTTTTTTGTTGCTTCGTCCTGCGGGACTCGTTTCCAGTTTCCAAGTGCTGTTGAAATCTTCCCCATCTTGCTATTTCTTCTCCATCTCTACAATTTAATTTTTTTGTTATAATCTTTATTTAACCGCTGCAATCGTGTTACTGGAGATTTTCCTGTCTATATCCCCCCCTCCGGATTCGGATATAGCGTCATGAACGGGAAGGCATCAGTTACCAAAGAGCTTAATGCTAAGCATAAAAAGATATTGGAGGGACTTCTTAAATTGCCAGAGAATAGAGAATGTGCCGATTGTAAGGCCAAAGGTCCACGATGGGCTAGTGTAAACTTGGGGATCTTTATTTGCATGCAATGTTCTGGAGTACATAGAAGCTTGGGAGTTCACATCTCAAAGGTGAGGTCTGCTACACTAGATACATGGCTTCCAGAACAGGTTGCATTTATCCAATCCATGGGAAATGAGAAGTCAAATAGTTATTGGGAAGCAGAACTTCCTGCAAATTATGACAGGGTTGGAATTGAAAACTTTATCCGAGCAAAATACGATGACAGAAGATGGATACCAAAGAATGAAGCATCTAGGTCTTCAAAAATACCAGAGGAAAGAGCTAATGAACCTGTGCAAAAGTCTGTTGATAAAGATGGACATCGGAATAGCAATAATTTAGGAGCTGTGGAGGAGTTTAAAAAAGTTCCACTTCAACCAACAAGGAAGAATGCTGTGGCGGTTTCTAAAACTATTGCTCAAGCAACCACAGTACATGTTTCTATTCAATCAAATTCTGAACCAACCTTGCCAAAGGCTGATGCTCCACAACCAGCACAGATGGTTCACACTCAACATGAAAATGTGTCTACCCAAGTTAATACCCAACCCACTAAATTGTCCGCACCTGCCAAACCTACCCCACCAGCTGAAAGTACACCACAAAAATTTGATTATGCTACCGATCTTTTTAATTTGCTCTCTATGGACAATTCAGCAGGAAACGAATCAGAACCATCCTCAAATGATGATAATTCATGGGCAGAATTTCAGTCTGCAGAGAAAAATATTGCCACCAAACCGGTTAGAGATAACAGTCGATCTACTGTTCTAATCGAGGATCCCTTTAGAAATTCATTGTCTGTGGCACAAACGGTTGCTCCAATGAATTCACAAGCAAATGTGAAGAGTGATATTATGGGTCTATTTGAAAAGTCAAGTATGGTTTCCCCCTATGCCATCCGTCAGCAGCAGCTTGCCTTTCTTTCCCAGCAACAGACTCTTCTCATGGCTGCAGCTAAATCCGGTGCTGCTGCTTCAATGATCCCATTGAATTCTGCTCTTCAAACCCATTTCAATATTTCCAATGCACCCGGTGGAGCTCTTTTAAGCCAAAACTGGCCGACACTCGGAATCTCTGCTCCAGGAATGGCTCCATCAATCGCGCAAAGTCACCTCAACAGCTTTAGTCAGAGTATTAGACCAGCATATCCAGGAAATTCTGCATCTATTCCTACTCCCAGCGTGTTCTCTTTGAACTCAACCGCACCGATCAATGGAGTGGCGGCCGTTAGCGGGGCAACGGGTTGCCCCGCTCCTGCAACAGCCGCACAATCTGGAACAGAGTACTTCTCATCATTAATGCCAGGGATGTTTTCGAAACAATGAAGGCTGAGAGCGGAGTCAGGGTCCAGATATGTTGGGTTAGCTGGCTTGGAGGAATAATTCATATTTTATGATCGAATGTGAGATTAGTAAATTGATCTCTTATTATGGAGAGACTCTTTCCTGGATGATTTGTTACTGGATTCATTTGATAGAGAGTGACTTGCATACAGAATGAATAAGCTCTGCCATTTGTTGGCAAAAAGATTCCTTTCCTTTAAGTGGTGGTGATGCTTTTGTAATAGAGGGTGAAGAAAAATTATGAGCATAATGCCCATTCCTTCTGAATTAGAAAAATGATGTGTATTCGCCTTATAATTTTGGAATTATTTTACACTCATGCCATAGAAATATGTATGATTTATATACTAAACACTCAATTTTTAAATATTTGCTAAACGCTTGACCATGATCTTGTGTGAAATTTCATCCTC

Network for GWHGAAEX010423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.17	ArfGap	17	123	1.70E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	Molecular Function	GTPase activator activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	82.810
SRP064423	SRR2545915	Juvenile tuber	59.320
SRP108465	SRR5643513	five period of Gastrodia elata	43.460
	SRR5643514	five period of Gastrodia elata	34.580
	SRR5643515	five period of Gastrodia elata	38.600
	SRR5643524	five period of Gastrodia elata	39.030
	SRR5643525	five period of Gastrodia elata	47.180
	SRR5643528	five period of Gastrodia elata	59.650
	SRR5643658	five period of Gastrodia elata	49.910
	SRR5643659	five period of Gastrodia elata	37.800
	SRR5643660	five period of Gastrodia elata	40.870
	SRR5643661	five period of Gastrodia elata	34.350
	SRR5643662	five period of Gastrodia elata	36.390
	SRR5643663	five period of Gastrodia elata	40.910
	SRR5643664	five period of Gastrodia elata	37.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	69.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	82.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	54.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	54.740
SRP279888	Gastro	Gastrodia elata tuber	38.55
	Juven	Juvenile tuber	58.66
	Mother_Gastro	Mother tuber of Gastrodia elata	51.84
	Mother_Juven	Mother tuber of Juvenile	63.11