Gene detail

Detail information of GWHGAAEX010428/evm.TU.scaffold_296.9

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780054\|ref\|YP_008431859.1\|	2.00E-31	hypothetical protein N186_02310 [Thermofilum sp. 1910b]
KOG	KOG1521	1.00E-165	RNA polymerase I and III, subunit RPA40/RPC40
nr	gi\|672155487\|ref\|XP_008797750.1\|	0	PREDICTED: DNA-directed RNA polymerases I and III subunit rpac1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q39211\|NRPB3_ARATH	1.00E-35	DNA-directed RNA polymerases II, IV and V subunit 3
trEMBL	tr\|M0TF47\|M0TF47_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P06070_001}
TAIR	AT1G60620	1.00E-165	RNA polymerase I subunit 43

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000291	214463	249227	+

Transcript Sequence
>GWHTAAEX010428 AAATCCCTCTCTTTTCCTCTCCCCCAGCCGAAACCCTCTCACCCTAACCGATCCTCCAAAAATCGCAAAGCCTCTCCTCCCTGCAGGCGCCGACGTCTCCCTCAATGGACGAGCACCCGATGGGCTCCCTCCTCTCGGCTGATGGCCGATAGCAGCCCGAATCCTTCCCTCTCGGCTGAATACTGAGAGCAGGAGCATCCCTCCTCTCTGTCCTTGCTGAGGATTGATTCCTCCATCTCCCAATCGGTGCAAGTGCTTGCCGATCCTTGAGCTCGTCGACCTCTTTCACCGTGCCTATACGTCCTACTTCTTCGTCGTTCGCTACCGGCAAGACGCTCAGTCAAATGAATACCCTCTATTTAATTCGGATTGAATGCATGAGCTTAAGGTTCCTAATCTAAGAGCTATAAAAGCTTCAAGGCCTTCGTCAAGCTAGTTGTGAGATTGTACTTGTACTCAAGTAGCTTTAGATATGCCGGATATTCTACAAGCTCAGCTCCCTGAGCATCTTGAGCTTCAGAGGAGTCGAGTATTTTGCAAGGCTGATGCACCAATACATACAGAGGGTATTGATTATTCTGGTGCTTATGCGGAGATGGGGTTTGACAATAGCTTGCAAGTAGACCATTTTCGCAGAGATTTCAAAGTTGAAATAAAGAAGCTGACAAAAGATGTTATTGAATTTGACATGATTGGGATTGATGCTTCTTTGGCTAATGCATTCAGGAGGATTTTGATAGCTGAGGTTCCAACAATGGCAATTGAAAAGGTTCTTATCGTTAACAATACATCAGTGATGGCTGACGAGATACTATCCCATAGGCTCGGCCTTCTCCCAGTGGAGGCCGACCCAAGGCTATTTGACTCTCTTTCTGAAAATGATACTCCGAATGAGCGGAATACTATAGTTTTTAGAATGAAAGTTAATTGTACGAAGGGTGGTCCTCGTCTTACCGTGAAATCTGATCAGCTACAATGGCTGCCAAATGGCAGTGAGCTATATATGGAAACACCTAATCCTTCTACAAAATCACGACAGTACACATCATTCTCTTGCAGTCAAGCCTCTCTGCCGCAATTTTCTGACAAGCCAATCGGCATGAAGCATCATGACATTATCATTACTCAGCTTGGTCCAGGACAGACTATTGAGCTTGAAGCCCATGCTGTGAAAGGCGTAGGAAAAGTTCATGCCAAGTGGTCTCCTGTTGGTACAGCATGGTACAGGATGCTGCCAGAGGTTGTACTATTGAAAGATGTGCATGGAAATGATGCAGAAAAACTAGTCAAAAAATGCCCAGTAAAAGTGTTTGATATTGAAGAAGTTGGACATGGTGTGAAGAATGCTGTTGTTTCTAGGCCGCGAGATTGTACATTGTGTAGGGAATGCATTAGTGTTGCAGGCGAGAAAATTGCGCTGAGACGAGTCAGAGAACACTTCATCTTTACTTTGGAGTCTACCGGTGCTTTACCTCCGGAGGTGCTATTTACAGAAGCTGTGAAGATCTTGGAAGAAAAGTGTAAACGTGTTATTTCTGAGCTTTCGTAGCAGATAGCTTTAAAATCTATAATAATGATTTTTTTTTTTGCTTTTGCAGTGCAGCTTTTCGAAATTTTAAGCTGCAAATATTTATGTAATAAAATTTTTAGAACCGTTTACATTGTCTCTTTATAAATGAAATGCCTGAATTAATTGTCTTTTTCTGCTTTTATTGAATCATGCTTAAGAATGACAGTAACATAAATACACGACATGCTAAACGAGCTTATTTTTGTTCAAGATTGATTTTGAC

Network for GWHGAAEX010428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01193.23	RNA_pol_L	70	350	9.70E-24
PF01000.25	RNA_pol_A_bac	100	244	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03027	RPC40, POLR1C	RNA polymerase	map03020
K03027	RPC40, POLR1C	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.250
SRP064423	SRR2545915	Juvenile tuber	45.920
SRP108465	SRR5643513	five period of Gastrodia elata	53.010
	SRR5643514	five period of Gastrodia elata	55.370
	SRR5643515	five period of Gastrodia elata	50.130
	SRR5643524	five period of Gastrodia elata	59.910
	SRR5643525	five period of Gastrodia elata	34.090
	SRR5643528	five period of Gastrodia elata	40.520
	SRR5643658	five period of Gastrodia elata	35.310
	SRR5643659	five period of Gastrodia elata	45.030
	SRR5643660	five period of Gastrodia elata	42.440
	SRR5643661	five period of Gastrodia elata	39.800
	SRR5643662	five period of Gastrodia elata	45.270
	SRR5643663	five period of Gastrodia elata	41.030
	SRR5643664	five period of Gastrodia elata	36.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	61.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	61.470
SRP279888	Gastro	Gastrodia elata tuber	46.04
	Juven	Juvenile tuber	38.24
	Mother_Gastro	Mother tuber of Gastrodia elata	30.77
	Mother_Juven	Mother tuber of Juvenile	28.09