Gene detail

Detail information of GWHGAAEX010429/evm.TU.scaffold_296.11

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672178273\|ref\|XP_008809265.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Phoenix dactylifera]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	3.00E-119	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|I1NYD2\|I1NYD2_ORYGL	2.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA02G0073800.1}
TAIR	AT4G38180	1.00E-118	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000291	252647	278759	+

Transcript Sequence
>GWHTAAEX010429 ATCGAAATCAATTCATAGACCCAAAATAACCTCTCATTCTAGCCAGGCCCCTCTCCTCCTATCGAATTCTCCAACTTCCTTCGCGTACAGCAGAAAGGGGTCAGCGAACCTCACGTCTTCCTCTCATCGCCGCTCCTTCTTCAACTCAGCTTCTCCTTTCTTCGACGCCGATCTTTCCTCTTGCTTCGAAAAACTATTCGATCCTTCATCCTTTCCATTCCCACACAAGACGTCGATCTGGTTTGACGCCTTTAACGAAGCCGACAATCTCGTTTGTTTGAATTTGCATTGTCGTCCGTCTTCTACTTCAGTGGAATCTACAAGAACCACCGTTCTTCGTTCATTTACATCTTCGATTCTTCATCTTCGAGTTCCTCTCGTGTGCCGCCGATTTCAAACCCTACTGTCGATCTGCTGAATCTCTGTGGCTGCCTAGAACAACTTAATAGGTTATATCCGCTAGCCGAACCCGTAACCTCTGGAAACATGACAGCAGCTTTTATCACTGCGCTAAGGCCTCTCTTCTAATCATGTTTTGGGATGATGAGTTTTTTCTTCACTATCCAAAACAGCTCTGAAAGGAATGGGGTCTCATGTGACTTAAAACTATCAGTATTGTTTTTGAATAATGTTGGCAGTTAAAATAGCTGTGTTTAGATATGAATGTTAGCTGAAAGCTGCAAGAATGTCCTGGAATGGCAAGCAAAACACTGAAGATGAAAGAAAGCGTGTCTGGAGAGAATGCTGCATCCAATGCATCTGGCATTTCCAGAGAAGTTGATTGCAGGTCTGACATCTTAGTTTCTAAAGATGACAAGTTAATTGAAGGATCCCTTACTCAAGAAGGGGTTTACAATTCGCAACTAGAGCCATGGGTCGGCCTGCAGTTCAATTCGGAAGAACAAGCTTATGAGTTCTACAATTCTTATGCAAAGAGAAAAGGCTTTAGTGTACGCAAGGGTCACCTTTCACGAAGGAAGGACGGGAGCATTCGAGATAGGCATTATTTGTGCAGCAATGAAGGCACACGGCAGGAGCATCGCACACACGTGACAAAGAAGCCACGTGCCATTGAGAGAACGAATTGCTTGGCCCGCATTGAATGGAAGGTTAGCCGTGAGAATGTGTGGACCATAAGCAAGTACGTTGATGAGCATAATCACCCACTTGCAAGCCCTAACAAGATACACATGTTGAGATCCCACAGAGCCAAATTTCCTCCCCATCGTTTGTTCATAAGTGATTCGGACTACATTGGCATCAAAACATCCGAAACATGCGACACTCTAACGGAAAATCATGGCCCCGGAGGTGGTGCGGATAGCGTAGCAGCAGCAGCGTTTCTTTACAAGAACCAGATCTGCTGCTTGTTGCAGAGTAATAGAAGCAGAGATCTGGAGAAAGGAGACCTGCAATTCCTCTTGAACTTCCTTAAAGCCAAGCAGTTGGAGGACTCTACTTTCTGTTATTCGGTGCAGCTGGATGAGAAGGATCGGCCTACCAACTTTTTCTGGACAGATGTGCGTTCCATATTCGATTATAGCTGTTTCGGTGATTCTGTTTTGTTTGATACAACGTATCGAGCTAGTAGCTATGACATTCCATTTGCCCCATTTATTGGCGTAAATCATCACAAGCAGATTGTCCTTTTTGGCGCAGCTCTGCTCTTGGATGAAACCGCAGAGTCATTTTACTGGTTGTTCAAAACCTTCATAGCAGCCATGTCTGGAAAACAACCAAAAACAATCCTGACGGATCAGTGCCCAGAAATGTCTAAGGCGATAGGCATGTCGATGCCTGAAGTGTGTCATCGGTTTTGCCTGTGGCATATTCTCGAGAAAGCTCCGAAAATCATCCCACATGTATTTGGCCGTGACCCGAGCTTTGAGAAAGCTTTTGAGAATTGTCTATGTGAAGGCTGCTCGGAGATTGATTTCTGCAAAGCATGGGAGAAACTGACATCCCAGCTTGGCCTTGCGAGCAATTCGTGGTTGGAAGATTTATATGCGGCCAGAGACAAGTGGTCTATGGTATACTGCAGAAACTCATTCTGCGCCAGCATGACGACCAAGGAATGGAGAGATACAATGGAAAGCAATTTCAAGATGCTATTTTACAGGAAGCTGCCGCCTTCCAAATTCATGGTGCAATATCACAAGGCATTGAATCAACTTCGTGAGAAGGAATTTGCTGAAGATCATGAGTTGAGAAGGGCTTGTGGATCGTCGGCAGCCTCCCCGCTGCTGGCTGATGTGCCAATGCTGGCGGAGGCCGCGGAAGCTTATACAAGAGCGATATACAAGGATTTCGAAGAAGAGTACAAAAGCCAGCTCGCTTGTGTCTGCGAACCGGTGGGAATAGAAAGAAATGTGTACGCTTTCAGGGTGTCGATTCCAGGGAAACGCTCTTTCGGCCTTGTTGAGTTTGACGCCACGAATCTCTCGGTTACATGCAGCTGCAAGAAGTTTGAATCCATGGGAATTTTATGCATGCATGCTTTGAAGGTTCTTAATTACAACAACATTCTTCACCTTCCGGCACGGTATCTGCTCAAGAGATGGACTAAACATGCAAAGGAAGGAACATTGGCAGCAGCGCAAGCAACAGAAATGCAGCAGCAGCTGGACCTTCATGATGATTACAGCAGGGTTGTGCGCAAGGTTATTACGGTTGTCGTTAAAAGTTCTCTGTCAAAAGAAGCCCTTCAGCTCGTGGAACATAGGCTCGACGCGTACATGGCGGAAACTGAGAATACACTGCTGATTAAGCAGCAGCAGCAGCAGTTGGATGATGTTATTCATGATCTGCAGCAACAGAATGCAGTTGCAGAAGCAAACAATCTTTTGTTTTGATGGTAATCTCAGCTCTTTCTTGTATTCATTCTCATGTGATAATCATTTTTAAATTTATTAGATACTTGATCAATCTGTCTAGAAGTACCAAAGGTTGGAGCTAGATATATATAAATTCCAAAGTTTGGGATGTTATGTATGTAAAAGTGTATACTAAAGCACATTTTAATCGAGCCTAGTAAAGCCTGCAGATTTATTAAATCTATATAGAAAATATCAAACTTATAAGATAAAAAAATCATGTCTTACAGAAAACATGGTGCC

Network for GWHGAAEX010429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	73	159	5.60E-21
PF10551.8	MULE	289	381	8.20E-26
PF04434.16	SWIM	562	607	6.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.480
SRP064423	SRR2545915	Juvenile tuber	28.440
SRP108465	SRR5643513	five period of Gastrodia elata	22.550
	SRR5643514	five period of Gastrodia elata	21.060
	SRR5643515	five period of Gastrodia elata	21.960
	SRR5643524	five period of Gastrodia elata	22.050
	SRR5643525	five period of Gastrodia elata	40.960
	SRR5643528	five period of Gastrodia elata	35.550
	SRR5643658	five period of Gastrodia elata	38.280
	SRR5643659	five period of Gastrodia elata	22.120
	SRR5643660	five period of Gastrodia elata	22.990
	SRR5643661	five period of Gastrodia elata	20.920
	SRR5643662	five period of Gastrodia elata	24.800
	SRR5643663	five period of Gastrodia elata	26.040
	SRR5643664	five period of Gastrodia elata	25.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.590
SRP279888	Gastro	Gastrodia elata tuber	20.62
	Juven	Juvenile tuber	35.27
	Mother_Gastro	Mother tuber of Gastrodia elata	30.55
	Mother_Juven	Mother tuber of Juvenile	52.53