Detail information of GWHGAAEX010431/evm.TU.scaffold_2961.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0869 | 8.00E-57 | CCAAT-binding factor, subunit A (HAP3) |
| nr | gi|334302505|gb|AEG75669.1| | 5.69E-64 | CCAAT-box binding factor HAP3-like protein [Picea abies] |
| Swissprot | tr|Q9SFD8|NFYB9_ARATH | 4.00E-57 | Nuclear transcription factor Y subunit B-9 |
| trEMBL | tr|F6LIE1|F6LIE1_PICAB | 2.00E-64 | CCAAT-box binding factor HAP3-like protein {ECO:0000313|EMBL:AEG75669.1} |
| TAIR | AT1G21970 | 8.00E-57 | Histone superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00002953 | 468 | 970 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010431
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00808.22 | CBFD_NFYB_HMF | 1 | 64 | 1.40E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08065 | NFYB | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 94.660 |
| SRR2545915 | Juvenile tuber | 71.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.670 |
| SRR5643514 | five period of Gastrodia elata | 49.900 | |
| SRR5643515 | five period of Gastrodia elata | 44.070 | |
| SRR5643524 | five period of Gastrodia elata | 40.230 | |
| SRR5643525 | five period of Gastrodia elata | 154.460 | |
| SRR5643528 | five period of Gastrodia elata | 40.990 | |
| SRR5643658 | five period of Gastrodia elata | 59.020 | |
| SRR5643659 | five period of Gastrodia elata | 57.040 | |
| SRR5643660 | five period of Gastrodia elata | 67.750 | |
| SRR5643661 | five period of Gastrodia elata | 53.550 | |
| SRR5643662 | five period of Gastrodia elata | 81.020 | |
| SRR5643663 | five period of Gastrodia elata | 73.200 | |
| SRR5643664 | five period of Gastrodia elata | 105.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 175.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 122.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 138.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 201.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 273.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 303.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 219.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 231.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 105.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 117.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 110.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 110.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 219.41 |
| Juven | Juvenile tuber | 223.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 188.60 | |
| Mother_Juven | Mother tuber of Juvenile | 172.11 |