Detail information of GWHGAAEX010437/evm.TU.scaffold_3.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328949667|ref|YP_004367002.1| | 4.00E-89 | DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] |
| KOG | KOG0331 | 0 | ATP-dependent RNA helicase |
| nr | gi|695040718|ref|XP_009407947.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q650T9|RH7_ORYSJ | 0 | DEAD-box ATP-dependent RNA helicase 7 |
| trEMBL | tr|M0TF33|M0TF33_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P05930_001} |
| TAIR | AT5G62190 | 0 | DEAD box RNA helicase (PRH75) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 107572 | 116676 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010437
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 150 | 328 | 2.50E-46 |
| PF00271.30 | Helicase_C | 368 | 471 | 3.40E-26 |
| PF08152.11 | GUCT | 561 | 656 | 1.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.920 |
| SRR2545915 | Juvenile tuber | 53.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 54.760 |
| SRR5643514 | five period of Gastrodia elata | 52.830 | |
| SRR5643515 | five period of Gastrodia elata | 53.340 | |
| SRR5643524 | five period of Gastrodia elata | 55.350 | |
| SRR5643525 | five period of Gastrodia elata | 34.300 | |
| SRR5643528 | five period of Gastrodia elata | 45.290 | |
| SRR5643658 | five period of Gastrodia elata | 30.440 | |
| SRR5643659 | five period of Gastrodia elata | 84.500 | |
| SRR5643660 | five period of Gastrodia elata | 82.040 | |
| SRR5643661 | five period of Gastrodia elata | 76.560 | |
| SRR5643662 | five period of Gastrodia elata | 85.710 | |
| SRR5643663 | five period of Gastrodia elata | 82.330 | |
| SRR5643664 | five period of Gastrodia elata | 69.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 56.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 73.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 70.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 98.26 |
| Juven | Juvenile tuber | 103.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.33 | |
| Mother_Juven | Mother tuber of Juvenile | 103.79 |