Detail information of GWHGAAEX010440/evm.TU.scaffold_3.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428307996|ref|YP_007144821.1| | 4.00E-109 | uridylate kinase [Crinalium epipsammum PCC 9333] |
| nr | gi|672121657|ref|XP_008784129.1| | 7.66E-164 | PREDICTED: uncharacterized protein LOC103703154 [Phoenix dactylifera] |
| Swissprot | tr|O81852|AKH2_ARATH | 1.00E-06 | Homoserine dehydrogenase (Precursor) |
| trEMBL | tr|M0RIK8|M0RIK8_MUSAM | 3.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15830_001} |
| TAIR | AT3G18680 | 7.00E-153 | Amino acid kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 1294407 | 1336744 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010440
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00696.27 | AA_kinase | 93 | 302 | 1.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09903 | pyrH | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process |
| GO:0033862 | Molecular Function | UMP kinase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.990 |
| SRR2545915 | Juvenile tuber | 2.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.740 |
| SRR5643514 | five period of Gastrodia elata | 3.170 | |
| SRR5643515 | five period of Gastrodia elata | 2.140 | |
| SRR5643524 | five period of Gastrodia elata | 3.680 | |
| SRR5643525 | five period of Gastrodia elata | 1.110 | |
| SRR5643528 | five period of Gastrodia elata | 1.410 | |
| SRR5643658 | five period of Gastrodia elata | 1.480 | |
| SRR5643659 | five period of Gastrodia elata | 1.270 | |
| SRR5643660 | five period of Gastrodia elata | 1.020 | |
| SRR5643661 | five period of Gastrodia elata | 2.350 | |
| SRR5643662 | five period of Gastrodia elata | 1.690 | |
| SRR5643663 | five period of Gastrodia elata | 1.700 | |
| SRR5643664 | five period of Gastrodia elata | 1.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.33 |
| Juven | Juvenile tuber | 2.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.17 | |
| Mother_Juven | Mother tuber of Juvenile | 0.79 |