Detail information of GWHGAAEX010442/evm.TU.scaffold_3.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262196624|ref|YP_003267833.1| | 4.00E-20 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| KOG | KOG0118 | 6.00E-62 | FOG: RRM domain |
| nr | gi|743763513|ref|XP_010911945.1| | 2.20E-91 | PREDICTED: glycine-rich RNA-binding protein RZ1A-like [Elaeis guineensis] |
| Swissprot | tr|Q9LIN3|RZ1A_ARATH | 2.00E-62 | Glycine-rich RNA-binding protein RZ1A {ECO:0000305} |
| trEMBL | tr|I1GL58|I1GL58_BRADI | 2.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G02570.2} |
| TAIR | AT3G26420 | 6.00E-62 | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 1676139 | 1687514 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010442
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 10 | 78 | 1.00E-21 |
| PF00098.22 | zf-CCHC | 124 | 139 | 6.50E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12885 | RBMX, HNRNPG | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 256.990 |
| SRR2545915 | Juvenile tuber | 217.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 262.700 |
| SRR5643514 | five period of Gastrodia elata | 248.530 | |
| SRR5643515 | five period of Gastrodia elata | 245.070 | |
| SRR5643524 | five period of Gastrodia elata | 245.940 | |
| SRR5643525 | five period of Gastrodia elata | 125.250 | |
| SRR5643528 | five period of Gastrodia elata | 113.430 | |
| SRR5643658 | five period of Gastrodia elata | 114.060 | |
| SRR5643659 | five period of Gastrodia elata | 226.450 | |
| SRR5643660 | five period of Gastrodia elata | 242.650 | |
| SRR5643661 | five period of Gastrodia elata | 247.970 | |
| SRR5643662 | five period of Gastrodia elata | 247.280 | |
| SRR5643663 | five period of Gastrodia elata | 246.170 | |
| SRR5643664 | five period of Gastrodia elata | 247.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 252.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 155.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 242.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 313.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 273.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 318.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 277.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 272.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 229.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 245.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 242.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 242.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 260.67 |
| Juven | Juvenile tuber | 300.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 151.35 | |
| Mother_Juven | Mother tuber of Juvenile | 217.80 |