Detail information of GWHGAAEX010443/evm.TU.scaffold_3.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502738|ref|YP_001958455.1|2.00E-08hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|743817822|ref|XP_010931044.1|5.15E-152PREDICTED: U-box domain-containing protein 27-like [Elaeis guineensis]
Swissprottr|Q9FLF4|PUB27_ARATH2.00E-89U-box domain-containing protein 27
trEMBLtr|F2E489|F2E489_HORVD3.00E-129Predicted protein {ECO:0000313|EMBL:BAK02161.1} (Fragment)
TAIRAT5G646607.00E-89CYS, MET, PRO, and GLY protein 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000220647832066782+
Transcript Sequence

Network for GWHGAAEX010443

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.14U-box17879.80E-20
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.590
SRR2545915Juvenile tuber20.000
SRP108465SRR5643513five period of Gastrodia elata62.190
SRR5643514five period of Gastrodia elata49.460
SRR5643515five period of Gastrodia elata109.560
SRR5643524five period of Gastrodia elata38.540
SRR5643525five period of Gastrodia elata91.050
SRR5643528five period of Gastrodia elata103.360
SRR5643658five period of Gastrodia elata163.050
SRR5643659five period of Gastrodia elata75.800
SRR5643660five period of Gastrodia elata21.290
SRR5643661five period of Gastrodia elata48.150
SRR5643662five period of Gastrodia elata60.280
SRR5643663five period of Gastrodia elata36.120
SRR5643664five period of Gastrodia elata172.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1178.680
SRR6049655Rhizomagastrodiae_C368-T10_good_1195.990
SRR6049656Rhizomagastrodiae_C368-T07_good_1123.950
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.260
SRR6049658Rhizomagastrodiae_C368-T04_good_1105.160
SRR6049659Rhizomagastrodiae_C368-T04_good_1127.710
SRR6049660Rhizomagastrodiae_C368-T01_good_1213.200
SRR6049661Rhizomagastrodiae_C368-T04_good_1137.940
SRR6049662Rhizomagastrodiae_C368-T01_good_180.090
SRR6049663Rhizomagastrodiae_C368-T01_good_1175.830
SRR6049664Rhizomagastrodiae_C368-T10_good_1164.250
SRR6049665Rhizomagastrodiae_C368-T10_good_1164.250
SRP279888GastroGastrodia elata tuber 30.99
JuvenJuvenile tuber11.77
Mother_GastroMother tuber of Gastrodia elata 258.12
Mother_JuvenMother tuber of Juvenile 146.76