Detail information of GWHGAAEX010444/evm.TU.scaffold_3.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220920313|ref|YP_002495614.1| | 2.00E-18 | surfeit locus 1 family protein [Methylobacterium nodulans ORS 2060] |
| KOG | KOG1563 | 4.00E-111 | Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase |
| nr | gi|743859565|ref|XP_010942780.1| | 1.17E-147 | PREDICTED: surfeit locus protein 1 isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q9SE51|SURF1_ARATH | 2.00E-117 | Surfeit locus protein 1 |
| trEMBL | tr|M0RZB1|M0RZB1_MUSAM | 2.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P12530_001} |
| TAIR | AT3G17910 | 4.00E-111 | Surfeit locus 1 cytochrome c oxidase biogenesis protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 2172238 | 2194191 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010444
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02104.14 | SURF1 | 66 | 324 | 3.20E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.050 |
| SRR2545915 | Juvenile tuber | 11.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.580 |
| SRR5643514 | five period of Gastrodia elata | 11.670 | |
| SRR5643515 | five period of Gastrodia elata | 11.670 | |
| SRR5643524 | five period of Gastrodia elata | 10.870 | |
| SRR5643525 | five period of Gastrodia elata | 7.760 | |
| SRR5643528 | five period of Gastrodia elata | 7.990 | |
| SRR5643658 | five period of Gastrodia elata | 4.800 | |
| SRR5643659 | five period of Gastrodia elata | 11.950 | |
| SRR5643660 | five period of Gastrodia elata | 13.250 | |
| SRR5643661 | five period of Gastrodia elata | 12.280 | |
| SRR5643662 | five period of Gastrodia elata | 10.670 | |
| SRR5643663 | five period of Gastrodia elata | 11.960 | |
| SRR5643664 | five period of Gastrodia elata | 13.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.09 |
| Juven | Juvenile tuber | 9.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.30 | |
| Mother_Juven | Mother tuber of Juvenile | 9.38 |